BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0523.0040.p (352 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin2072 [P] COG0609 ABC-type Fe3+-siderophore transport system, ... 330 2e-90 BH1083 [P] COG0609 ABC-type Fe3+-siderophore transport system, p... 302 4e-82 BS_fhuB [P] COG0609 ABC-type Fe3+-siderophore transport system, ... 297 2e-80 CAC0789 [P] COG0609 ABC-type Fe3+-siderophore transport system, ... 257 2e-68 SA0603 [P] COG0609 ABC-type Fe3+-siderophore transport system, p... 244 2e-64 >lin2072 [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component Length = 341 Score = 330 bits (846), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 161/340 (47%), Positives = 225/340 (66%), Gaps = 2/340 (0%) Query: 14 EGEKQLK--TRPXXXXXXXXXXXXXXXXXXXXSVSVGAADIRLASVWEAVFRFNPELPQH 71 + KQ+K TRP ++VGAA+I L++VW+A+F +N QH Sbjct: 2 DKSKQIKMNTRPTVAIFILSGGILLLLILALFGIAVGAANINLSTVWDALFHYNSSDTQH 61 Query: 72 QVIRELRIPRALAGALVGACFAVAGAIMQGMTRNPLADSGLLGLNAGASVGLALAFAFAP 131 Q+IR LR+PR +A +GA FAVAGAIMQG+TRNPLADSGLLGLNAG++ +A+ FAF P Sbjct: 62 QIIRSLRVPRVIADMAIGAAFAVAGAIMQGITRNPLADSGLLGLNAGSTFMVAVCFAFMP 121 Query: 132 SMSFIYIMLYCFIGAAAASLLVFGIGSLSHSGLTPLRXXXXXXXXXXXXXXISQGIAILF 191 +S+ ++++ F+GAA + LVFG+ S++ S ++P R +S+G+AI F Sbjct: 122 WLSYNSLIIFSFVGAAIGAFLVFGVSSIAGSAMSPTRLVLAGAAVSSLLTALSEGLAIYF 181 Query: 192 HLSQDIAFWMAGGIGGTSWTQLRIMFPWVAAALIGSLMISRSITLLSLGRDVAAGLGQRT 251 LSQD+AFW AGG+ G W+QL ++PW+ ALI ++++S+SIT+LSLG D+A GLG++T Sbjct: 182 QLSQDLAFWYAGGVAGVKWSQLAAIWPWLLGALIAAILLSKSITILSLGDDIAVGLGEKT 241 Query: 252 RLVQTXXXXXXXXXXXXXXXXXXPIAFIGLIIPHVTRFLVGVDYRWIIPCSAVLGSVLII 311 V+ P+ FIGLI+PH+ RFLVGVDYR+IIPCSAV+G+ L + Sbjct: 242 TFVKIASMVVVLILAGLAVSVVGPVGFIGLIVPHLVRFLVGVDYRFIIPCSAVVGAFLTL 301 Query: 312 FADIAARMINAPYETPLGALIAVIGVPFFIYLASKRKGGL 351 ADI AR IN PYETP+ + A+IGVPFF+Y+A K + L Sbjct: 302 AADIVARTINPPYETPISVIFALIGVPFFLYVARKERRNL 341 >BH1083 [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component Length = 338 Score = 302 bits (774), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 154/308 (50%), Positives = 213/308 (69%) Query: 44 SVSVGAADIRLASVWEAVFRFNPELPQHQVIRELRIPRALAGALVGACFAVAGAIMQGMT 103 S+S+GAAD+ +VW+AVF F+P L +HQ+I+ELRIPR++A ALVGAC A++GAIMQGMT Sbjct: 31 SISLGAADVGFKTVWQAVFAFDPTLTEHQIIQELRIPRSVAAALVGACLAISGAIMQGMT 90 Query: 104 RNPLADSGLLGLNAGASVGLALAFAFAPSMSFIYIMLYCFIGAAAASLLVFGIGSLSHSG 163 RNPLA +LGL G+++ +A+AFAF P +SF+ M F GA A+ LVF I L+ Sbjct: 91 RNPLASPSILGLTDGSTLAIAIAFAFIPGISFLQTMFMSFAGAGVAAALVFSIVFLAKGQ 150 Query: 164 LTPLRXXXXXXXXXXXXXXISQGIAILFHLSQDIAFWMAGGIGGTSWTQLRIMFPWVAAA 223 L+P++ ++ GIAI F ++Q ++FW AGG+ GT+WTQ++ + P Sbjct: 151 LSPVKLALAGVAIGALLDSLATGIAIHFQVAQHVSFWYAGGVAGTNWTQIQFLVPVFLLG 210 Query: 224 LIGSLMISRSITLLSLGRDVAAGLGQRTRLVQTXXXXXXXXXXXXXXXXXXPIAFIGLII 283 L SL I+RSIT+LSLG +VA GLGQRT V+ + F+GLII Sbjct: 211 LFLSLFIARSITVLSLGDEVAVGLGQRTFFVRIVAILAVLLLTGAAVSVAGAVGFVGLII 270 Query: 284 PHVTRFLVGVDYRWIIPCSAVLGSVLIIFADIAARMINAPYETPLGALIAVIGVPFFIYL 343 PHVTRFLVGVDYR ++PCSAV G++L++ ADI +RM+N P+ETP+GA+ A++GVPFF+YL Sbjct: 271 PHVTRFLVGVDYRVVLPCSAVFGALLLVLADIGSRMVNPPFETPIGAITALVGVPFFLYL 330 Query: 344 ASKRKGGL 351 A + + GL Sbjct: 331 ARRDRRGL 338 >BS_fhuB [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component Length = 384 Score = 297 bits (760), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 164/348 (47%), Positives = 219/348 (62%), Gaps = 1/348 (0%) Query: 4 STHSQPRTHPEGEKQLKTRPXXXXXXXXXXXXXXXXXXXXSVSVGAADIRLASVWEAVFR 63 S H RT E E Q +R S+S+GAADI L +VWEA+F Sbjct: 38 SQHKNIRTASE-EIQWTSRTYGAVIVLIAGLCLLCLGAFLSISLGAADIHLRTVWEAIFH 96 Query: 64 FNPELPQHQVIRELRIPRALAGALVGACFAVAGAIMQGMTRNPLADSGLLGLNAGASVGL 123 + P HQ+I +LR+PR A ALVGA AV+GAIMQGMTRNPLA+ ++G+ +G++ + Sbjct: 97 YQPTKTSHQIIHDLRLPRTAAAALVGALLAVSGAIMQGMTRNPLAEPSIMGVTSGSAFAV 156 Query: 124 ALAFAFAPSMSFIYIMLYCFIGAAAASLLVFGIGSLSHSGLTPLRXXXXXXXXXXXXXXI 183 ++AFAF P +S + ++L+ F GA + V GIG S GLTP++ I Sbjct: 157 SIAFAFFPGLSAMGLVLWSFAGAGLGASTVMGIGMFSRGGLTPVKLALAGTAVTYFFTGI 216 Query: 184 SQGIAILFHLSQDIAFWMAGGIGGTSWTQLRIMFPWVAAALIGSLMISRSITLLSLGRDV 243 S IAI F ++QDI+FW AGG+ G W+ ++++ A L + I+RS+T+LSLG D+ Sbjct: 217 STAIAIRFDVAQDISFWYAGGVAGVKWSGVQLLLIAGAVGLTLAFFIARSVTVLSLGDDL 276 Query: 244 AAGLGQRTRLVQTXXXXXXXXXXXXXXXXXXPIAFIGLIIPHVTRFLVGVDYRWIIPCSA 303 A GLGQ T V+ IAFIGLIIPH+TRFLVGVDYRWIIPCSA Sbjct: 277 AKGLGQYTSAVKLVGMLIVVILTGAAVSIAGTIAFIGLIIPHITRFLVGVDYRWIIPCSA 336 Query: 304 VLGSVLIIFADIAARMINAPYETPLGALIAVIGVPFFIYLASKRKGGL 351 VLG+VL++FADIAAR++NAP+ETP+GAL ++IGVPFF YLA + + GL Sbjct: 337 VLGAVLLVFADIAARLVNAPFETPVGALTSLIGVPFFFYLARRERRGL 384 >CAC0789 [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component Length = 334 Score = 257 bits (657), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 128/307 (41%), Positives = 195/307 (63%), Gaps = 3/307 (0%) Query: 44 SVSVGAADIRLASVWEAVFRFNPELPQHQVIRELRIPRALAGALVGACFAVAGAIMQGMT 103 S+ +GA + L VW AV + + +IRE+R+PR +A VGA AV+GAIMQG++ Sbjct: 28 SLILGAEKVSLNDVWLAVSS-SVKNGNINIIREIRLPREIAAVFVGAALAVSGAIMQGVS 86 Query: 104 RNPLADSGLLGLNAGASVGLALAFAFAPSMSFIYIMLYCFIGAAAASLLVFGIGSLSHSG 163 +NPLAD GLLGL AGA+ L + APS +++ I++ CF+GAAAA +LVFGI G Sbjct: 87 KNPLADPGLLGLTAGANAALTITITIAPSANYLTILISCFLGAAAAVVLVFGISFSKRGG 146 Query: 164 LTPLRXXXXXXXXXXXXXXISQGIAILFHLSQDIAFWMAGGIGGTSWTQLRIMFPWVAAA 223 +PLR ISQG+ I F LS+D++ W +GG+ GTSW +L ++ P++ Sbjct: 147 SSPLRIVLAGSAVSTFLFAISQGMQIYFKLSKDVSMWTSGGLIGTSWDELAVIIPFITLG 206 Query: 224 LIGSLMISRSITLLSLGRDVAAGLGQRTRLVQTXXXXXXXXXXXXXXXXXXPIAFIGLII 283 L + ++SR +T+LSL +VA GLGQ+T ++ + F+GL++ Sbjct: 207 LATAFILSRQLTVLSLSEEVAVGLGQKTTPIKAILFVVVTILAGASVALASNLVFLGLMV 266 Query: 284 PHVTRFLVGVDYRWIIPCSAVLGSVLIIFADIAARMINAPYETPLGALIAVIGVPFFIYL 343 PH+ F++G DYR++IP S VLG+ L++F+DI R++ +PYETP+ A+I++IG+PFF+++ Sbjct: 267 PHIAYFIIGKDYRFVIPISTVLGAALMVFSDILGRLVASPYETPVAAIISIIGLPFFLFI 326 Query: 344 ASKRKGG 350 KGG Sbjct: 327 V--HKGG 331 >SA0603 [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component Length = 334 Score = 244 bits (622), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 125/307 (40%), Positives = 185/307 (60%), Gaps = 5/307 (1%) Query: 44 SVSVGAADIRLASVWEAVFRFNPELPQHQVIRELRIPRALAGALVGACFAVAGAIMQGMT 103 S +G A I+ +++ EA+F +NP Q +I E+RIPR +A +VG AV+GAI+QG+T Sbjct: 30 STLIGDAKIQASTIIEAIFNYNPSNQQQNIINEIRIPRNIAAVIVGMALAVSGAIIQGVT 89 Query: 104 RNPLADSGLLGLNAGASVGLALAFAFAPSMSFIYIMLYCFIGAAAASLLVFGIGSLSHSG 163 RN LAD L+GLN+GAS LAL +A P+ SF+ +M F+GA +V IG G Sbjct: 90 RNGLADPALIGLNSGASFALALTYAVLPNTSFLILMFAGFLGAILGGAIVLMIGRSRRDG 149 Query: 164 LTPLRXXXXXXXXXXXXXXISQGIAILFHLSQDIAFWMAGGIGGTSWTQLRIMFPWVAAA 223 P+R +SQGIA+ F L+Q + FW AGG+ GT+W+ L+ P + A Sbjct: 150 FNPMRIILAGAAVSAMLTALSQGIALAFRLNQTVTFWTAGGVSGTTWSHLKWAIPLIGIA 209 Query: 224 LIGSLMISRSITLLSLGRDVAAGLGQRTRLVQTXXXXXXXXXXXXXXXXXXPIAFIGLII 283 L L IS+ +T+L+LG +A GLGQ +++ +AF+GL++ Sbjct: 210 LFIILTISKQLTILNLGESLAKGLGQNVTMIRGICLIIAMILAGIAVAIAGQVAFVGLMV 269 Query: 284 PHVTRFLVGVDYRWIIPCSAVLGSVLIIFADIAARMINAPYETPLGALIAVIGVPFFIYL 343 PH+ RFL+G DY I+P +A+LG +L++ AD+ AR + E P+GA+I+ IGVP+F+YL Sbjct: 270 PHIARFLIGTDYAKILPLTALLGGILVLVADVIARYLG---EAPVGAIISFIGVPYFLYL 326 Query: 344 ASKRKGG 350 +KGG Sbjct: 327 V--KKGG 331 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.327 0.140 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,371,674 Number of extensions: 712913 Number of successful extensions: 3364 Number of sequences better than 1.0e-05: 142 Number of HSP's gapped: 3037 Number of HSP's successfully gapped: 159 Length of query: 352 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 245 Effective length of database: 26,037,693 Effective search space: 6379234785 Effective search space used: 6379234785 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 116 (49.3 bits)