BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0523.0039.p (345 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin2073 [P] COG0614 ABC-type Fe3+-hydroxamate transport system, ... 96 8e-20 all2609 [P] COG0614 ABC-type Fe3+-hydroxamate transport system, ... 82 1e-15 BS_yxeB [P] COG0614 ABC-type Fe3+-hydroxamate transport system, ... 78 2e-14 slr1319 [P] COG0614 ABC-type Fe3+-hydroxamate transport system, ... 73 7e-13 lin0545 [P] COG0614 ABC-type Fe3+-hydroxamate transport system, ... 69 9e-12 >lin2073 [P] COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component Length = 313 Score = 95.9 bits (237), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 78/286 (27%), Positives = 136/286 (47%), Gaps = 19/286 (6%) Query: 70 KTVTDAMGHKVTVPANPQRVLASYLEDYLVTLGVTPVAQWSVTNGVQD-YLADELKDVPT 128 +T T A G KV +PA+P+R++AS +V LG+ PV + +++ +L +++ + Sbjct: 35 RTYTMANGKKVEIPAHPKRIVASEYLGNIVLLGIKPVG--ARAKQIENPFLKGKVEGITD 92 Query: 129 ISFDLPLEAVMGFAPDFHIVQSEASVQNGLYDQLNKIAPTYVLGDEISKDWRKSLLKIGE 188 I + E V PD +V E Y++++KIAPT ++ SK+ + + +I + Sbjct: 93 IGDPVSAEKVAELKPDLIVVSKEDE-----YEKMSKIAPTVLIPYATSKNVEEDVRQIAD 147 Query: 189 LL-NKSAEXXXXXXXXXXXXXXXXXXXSTVIGDDSVAILWLIKKNFYIVDETRSSGA-VV 246 L+ K A + +++V I + K+FY++ + G + Sbjct: 148 LVGEKKAGEAWLDKFHQKAKESREKLAGKLKPNETVGIYEVQDKDFYVMGQNMGRGGQAI 207 Query: 247 YGDLGLKLPNLVTEIPAASRATWNPISLEKLAELTADHIFLVNSDK---TEGSEIL---- 299 Y L LK P + + W ISLE L E AD +F+ N+ +G + L Sbjct: 208 YNALQLKAPAKI-QTDVLDGQDWQKISLEVLPEFAADRMFVTNTSSGSAKDGEKTLKDLT 266 Query: 300 NSPIWKGIPAVKAGNVHEFASNHSWLYSGAIANSKTIDDVLNSLVK 345 NSPIWK +P KAGNV++ + + Y +A +D V+ L++ Sbjct: 267 NSPIWKNLPTFKAGNVYQMDFD-TMFYYDPLAVEGQLDIVVEKLLE 311 >all2609 [P] COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component Length = 319 Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 74/281 (26%), Positives = 123/281 (43%), Gaps = 27/281 (9%) Query: 79 KVTVPANPQRVLAS---YLEDYLVTLGVTPVAQWSVTNGVQ--DYLADELKDVPTISFD- 132 + VP PQR++A+ LE L+ L P+ TN Q DYL + + ++ D Sbjct: 52 ETCVPNIPQRIIAASEPALEAALI-LDFKPIG---TTNYAQQADYLRERFESSDSVGLDS 107 Query: 133 --LPLEAVMGFAPDFHIVQSEASVQNGLYDQLNKIAPTYVLG--DEISKDWRKSLLKIGE 188 L LE ++ PD + + Q LYD+L+++APT + D S W++ + Sbjct: 108 RQLSLEKILTIKPDLILATDDYGEQQELYDRLSQMAPTVIAKWWDGQSIRWKECFQLFAQ 167 Query: 189 LLNKSAEXXXXXXXXXXXXXXXXXXXSTVIGDDSVAILWLIKKNFYIVDETR--SSGAVV 246 K++E + + ++I+ + + +T+ S + + Sbjct: 168 AFGKTSEAEETVNAYNQRIAELQQQMGDRLPNTVISIIEIYPDRIRLYGKTKTVSLSSTI 227 Query: 247 YGDLGLKLPNLVTEIPAASRATWNPISLEKLAELTADHIFLVNSDKTEG--SEILNSPIW 304 D+GL P S+ ISLE + + D IFL D ++LN P+W Sbjct: 228 IEDIGLPRP--------PSQEEGMDISLESIGDADGDIIFLTARDPEAQLYQQVLNHPLW 279 Query: 305 KGIPAVKAGNVHEFASNHSWLYSGAIANSKTIDDVLNSLVK 345 K + AV+AG V++ N W SG IA + +DD+ LVK Sbjct: 280 KQLKAVQAGKVYK-VENSYWGGSGYIAANLVLDDLFKYLVK 319 >BS_yxeB [P] COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component Length = 319 Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 73/276 (26%), Positives = 124/276 (44%), Gaps = 21/276 (7%) Query: 80 VTVPANPQRVLASYLEDYLVTLGVTPV--AQWSVTNGVQDYLADELKDVPTISFDLPLEA 137 V +PA+P+R++ + L+++G V WS N +L +LK+V + + +E Sbjct: 50 VNIPAHPKRIVTDFYAGELLSVGANVVGSGSWSFDN---PFLKSKLKNVKDVGDPISVEK 106 Query: 138 VMGFAPDFHIVQSEASVQNGLYDQLNKIAPTYVLGDEISKDWRKSLLKIGELLNKSAEXX 197 VM PD +V +E +V D+L KIAPT V+ +K+ ++ G++ + Sbjct: 107 VMELQPDLIVVMNEENV-----DKLKKIAPTVVIPYNTAKNVEDTVSMFGDIAGAKDQAK 161 Query: 198 XXXXXXXXXXXXXXXXXSTVIGDDSVAILW--LIKKNFYIV-DETRSSGAVVYGDLGLKL 254 + VI D+ ++ K F++ D G VY LGLK Sbjct: 162 SFMADFNKKAEAAKKKIAGVIDKDATFGIYENTDKGEFWVFNDNGGRGGQAVYNALGLKA 221 Query: 255 PNLVTEIPAASRATWNPISLEKLAELTADHIFLVNSDKTEGSEIL----NSPIWKGIPAV 310 P + E + +S E + E AD++F+ + + S+ L NS IWK + AV Sbjct: 222 PEKI-EQDVIKKGEMKQLSQEVIPEYAADYMFITDYNPKGESKTLDKLENSSIWKNLDAV 280 Query: 311 KAGNVHEFASNHSWLYS-GAIANSKTIDDVLNSLVK 345 K V F ++ Y I+ SK +D + + L+K Sbjct: 281 KHNRV--FINDFDSFYPYDPISVSKQVDIITDMLIK 314 >slr1319 [P] COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component Length = 315 Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 75/288 (26%), Positives = 131/288 (45%), Gaps = 29/288 (10%) Query: 69 EKTVTDAMGHKVTVPANPQR--VLASYLEDYLVTLGVTPVA---QWSVTNGVQDYLADEL 123 ++T+ AMG VP PQR VL + D ++ LGVTPV WS + +YLA ++ Sbjct: 37 QRTIAHAMG-VTAVPNEPQRIVVLTNEATDMVLALGVTPVGAVKSWS-GDPYYEYLAKDM 94 Query: 124 KDVPTISFDLP--LEAVMGFAPDFHIVQSEASVQNGLYDQLNKIAPTYVLGDEISKDWRK 181 VP + ++ LE ++ PD I+ S Q +Y L+ IAPT V + I + W+ Sbjct: 95 LGVPIVGDEMQPNLEKIVALQPDL-IIGSRLR-QGQIYKSLSAIAPT-VFSETIGESWQD 151 Query: 182 SLLKIGELLNKSAEXXXXXXXXXXXXXXXXXXXSTVIGDDSVAILWLIKKNFYIVDETRS 241 +L G+ L++ AE S D +++++ + + I + Sbjct: 152 NLRLYGQALDREAEAEQLLNDWDTRVAQMRQKLSA--KDLTISLVRFMPRGARIYLQNSF 209 Query: 242 SGAVVYGDLGLKLPNLVTEIPAASRATWNPISLEKLAELTADHIFLV-----NSDKTEGS 296 G ++ +GL+ P A+ +S E++ ++ AD +F + D+T GS Sbjct: 210 PGQILQA-VGLERPA-----SQANHGFAEHVSFEQIPQMEADALFYFIYTGDSGDQTPGS 263 Query: 297 EI---LNSPIWKGIPAVKAGNVHEFASNHSWLYSGAIANSKTIDDVLN 341 LN P+W+ + V++G + S+ W +G I + + D L Sbjct: 264 ITNPWLNHPLWQQLEVVQSGKAYA-VSDVVWTTAGGIQAAHLLLDDLE 310 >lin0545 [P] COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component Length = 306 Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 82/288 (28%), Positives = 118/288 (40%), Gaps = 36/288 (12%) Query: 70 KTVTDAMGHKVTVPANPQRVLASYLEDYLVTLGVTPVAQWSVTNGVQDY----LADELKD 125 KTVTD M KV VP P+R++A + LGV PV G DY K Sbjct: 40 KTVTDTMDRKVEVPTTPKRIVALQNVSEMEILGVKPV-------GTTDYYITTYPKATKG 92 Query: 126 VPTISFDLP-LEAVMGFAPDFHIVQSEASVQNGLYDQLNKIAPTYV--LGDEISKDWRKS 182 ++ D P +E + PD I+ + Q L + L K+AP Y+ GD K Sbjct: 93 TESVGNDKPSIEKIANLKPDLIII---SDYQKDLLENLEKVAPVYISHFGDTPD----KQ 145 Query: 183 LLKIGELLNKSAEXXX-XXXXXXXXXXXXXXXXSTVIGDDSVAILWLIKKNFYIVDETRS 241 L I LLNK +E + ++ A++ K Y+ D Sbjct: 146 LSNIANLLNKKSEKEKWDKDYAQSSKEAKATLKDAGVENEKAAVIQFYGKEIYVHD---- 201 Query: 242 SGAVVYGDLGLKLPNLVTEIPAASRATWNPISLEKLAELT--ADHIF-LVNSDKTEGS-- 296 A V+ L T+ A++ T IS E + E AD +F L+ +D E S Sbjct: 202 --AKVFDGLFSGAGFTPTDGAKANKET-KAISSEAIPEYAAGADRLFILMPTDGNEDSVN 258 Query: 297 EILNSPIWKGIPAVKAGNVHEFASNHSWLYSGAIANSKTIDDVLNSLV 344 E+LN +WK IPAVK V++ N W A A ++D + + Sbjct: 259 EMLNG-VWKDIPAVKKNQVYKV-DNTKWSDYSAAAQLYQMEDAVKQIT 304 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.315 0.132 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,391,063 Number of extensions: 750976 Number of successful extensions: 1563 Number of sequences better than 1.0e-05: 16 Number of HSP's gapped: 1559 Number of HSP's successfully gapped: 16 Length of query: 345 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 238 Effective length of database: 26,037,693 Effective search space: 6196970934 Effective search space used: 6196970934 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 116 (49.3 bits)