BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0523.0037.p
         (146 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_yvgU [O] COG1495 Disulfide bond formation protein DsbB             134   5e-32
BS_yolK [O] COG1495 Disulfide bond formation protein DsbB              65   4e-11

>BS_yvgU [O] COG1495 Disulfide bond formation protein DsbB
          Length = 138

 Score =  134 bits (337), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 59/106 (55%), Positives = 81/106 (76%)

Query: 13  LYLAWFVSVIAVAGSLYLSEVLKYEPCKLCWFQRIFMYPQLILLGIATYWNDKKIIPYVL 72
           LY +W V++IA+ GSLY SE+ K+ PC+LCW+QRI MYP +++LGIAT+  D ++  YVL
Sbjct: 8   LYASWVVALIAMLGSLYFSEIRKFIPCELCWYQRILMYPLVLILGIATFQGDTRVKKYVL 67

Query: 73  PLSLIGGCISIYHYAEQKIPALSKVLPCTIGVPCNKDYLNYFGFIT 118
           P+++IG  ISI HY EQK+P  S + PC  GVPC+  Y+N+FGFIT
Sbjct: 68  PMAIIGAFISIMHYLEQKVPGFSGIKPCVSGVPCSGQYINWFGFIT 113


>BS_yolK [O] COG1495 Disulfide bond formation protein DsbB
          Length = 148

 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/94 (45%), Positives = 55/94 (58%), Gaps = 3/94 (3%)

Query: 26  GSLYLSEVLKYEPCKLCWFQRIFMYPQLILLGIATYWNDKKIIPYVLPLSLIGGCISIYH 85
            SL+ SE++ ++PC LCW+QRIF+YP  I+L I     D   I YV+ LS IG  I+ YH
Sbjct: 23  ASLFYSEIMHFKPCVLCWYQRIFLYPIPIILLIGLLKKDLNSIFYVVFLSSIGLIIAFYH 82

Query: 86  YAEQKIPALSKVLPCTIGV-PCNKDYLNYFGFIT 118
           Y  Q     SK + C IG   C K  + Y GFIT
Sbjct: 83  YIIQLTQ--SKSVVCEIGTNSCAKIEVEYLGFIT 114


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.330    0.144    0.492 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 9,366,209
Number of extensions: 354196
Number of successful extensions: 582
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 582
Number of HSP's successfully gapped: 2
Length of query: 146
Length of database: 38,378,431
Length adjustment: 96
Effective length of query: 50
Effective length of database: 27,306,367
Effective search space: 1365318350
Effective search space used: 1365318350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 110 (47.0 bits)