BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0523.0036.p
         (143 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DR0753 [O] COG1651 Protein-disulfide isomerase                         57   1e-08

>DR0753 [O] COG1651 Protein-disulfide isomerase
          Length = 262

 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 60/125 (48%), Gaps = 8/125 (6%)

Query: 3   EYVNQDKAAFYFVNMAFIG---P--DSETASLAALSVYHQN-NDAFWTYYDALYANQGDE 56
           +YV   K   Y +   F+    P  DS+ A+ AA  VY Q  NDAF TY + L+  QG E
Sbjct: 121 KYVGTGKVKMYSLVYPFLADRLPEDDSKYAAQAARCVYAQGKNDAFNTYKEILFRAQGPE 180

Query: 57  NAEWATEDFLVSLAEKEKLPVDLELLRKDIKERTYESELQNDISIAKDTGVTSTPTVFIN 116
              WAT+  L  LA    L +D       +      ++++ D   A   GV  TPTVF+N
Sbjct: 181 TEVWATKSRLKELA--TSLDIDQAKFATCLDNDETAAQVETDKQEALKAGVGGTPTVFVN 238

Query: 117 GHKVD 121
           G  V+
Sbjct: 239 GKLVN 243


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.312    0.127    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 9,864,878
Number of extensions: 368624
Number of successful extensions: 885
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 889
Number of HSP's successfully gapped: 1
Length of query: 143
Length of database: 38,378,431
Length adjustment: 96
Effective length of query: 47
Effective length of database: 27,306,367
Effective search space: 1283399249
Effective search space used: 1283399249
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 110 (47.0 bits)