BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0523.0027.p
         (140 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH3826 [M] COG3773 Cell wall hydrolyses involved in spore germin...   152   1e-37
BS_cwlJ [M] COG3773 Cell wall hydrolyses involved in spore germi...   138   3e-33

>BH3826 [M] COG3773 Cell wall hydrolyses involved in spore germination
          Length = 143

 Score =  152 bits (384), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 72/140 (51%), Positives = 88/140 (62%)

Query: 1   VAVIKANTADVRTXXXXXXXXXXXXXXXXXXXVGNVGVNRILGNCLDFRNIRNVNDMVFQ 60
           +AVI+  + D+                      GNV VNR+   CLDF +I  V  MVFQ
Sbjct: 1   MAVIRTTSRDIDLLARLMRAEAEGEGDLGMLMAGNVMVNRVRVGCLDFADINTVERMVFQ 60

Query: 61  SPGGFEAPQKSYFYQRARESDIRLARRAIGGEKTWPASNALWFFRPVGECPATWFDQQNT 120
           SPGGFEA QK YFYQRARE + RLA+R + GE+T PA  +LWFFRP G CP  W+ Q N+
Sbjct: 61  SPGGFEATQKGYFYQRAREKERRLAQRIVNGERTHPAEFSLWFFRPDGPCPEQWYGQWNS 120

Query: 121 GRFKAHCFFTPSSEDCPAVF 140
           GR+KAHCFF P+S DCP V+
Sbjct: 121 GRYKAHCFFNPTSADCPEVY 140


>BS_cwlJ [M] COG3773 Cell wall hydrolyses involved in spore germination
          Length = 142

 Score =  138 bits (347), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 62/140 (44%), Positives = 87/140 (62%), Gaps = 1/140 (0%)

Query: 1   VAVIKANTADVRTXXXXXXXXXXXXXXXXXXXVGNVGVNRILGNCLDFRNIRNVNDMVFQ 60
           +AV++A +ADV                     VGNVG+NR+  NC DF+ +R +  M++Q
Sbjct: 1   MAVVRATSADVDLMARLLRAEAEGEGKQGMLLVGNVGINRLRANCSDFKGLRTIRQMIYQ 60

Query: 61  SPGGFEAPQKSYFYQRARESDIRLARRAIGGEKTWPASNALWFFRPVGECPATWFDQQNT 120
            P  FEA    YFYQRAR+S+  LAR +I GE+ WPA  +LW+FRP G+CPA W++Q   
Sbjct: 61  -PHAFEAVTHGYFYQRARDSERALARGSINGERRWPAKFSLWYFRPQGDCPAQWYNQPFV 119

Query: 121 GRFKAHCFFTPSSEDCPAVF 140
            RFK+HCF+ P++E C  V+
Sbjct: 120 ARFKSHCFYQPTAETCENVY 139


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.324    0.138    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 8,868,556
Number of extensions: 324569
Number of successful extensions: 429
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 428
Number of HSP's successfully gapped: 2
Length of query: 140
Length of database: 38,378,431
Length adjustment: 96
Effective length of query: 44
Effective length of database: 27,306,367
Effective search space: 1201480148
Effective search space used: 1201480148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 110 (47.0 bits)