BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0523.0021.p
         (442 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll1522 [GEPR] COG0477 Permeases of the major facilitator superf...    85   2e-16

>mll1522 [GEPR] COG0477 Permeases of the major facilitator superfamily
          Length = 297

 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 0/324 (0%), Positives = 0/324 (0%), Gaps = 8/324 (2%)

Query: 106 PLYSVYRTQWDLSPXXXXXXXXXXXXXXIPSIVLFGQVSDRIGPVRILLCGIAATLSGSL 165
            +                             +        +              L  S 
Sbjct: 49  RVRKNESNNSHEIVLTVASLEYIWAFSNFFWVFTQEYSKSQKNNDEHFDLTGKNRLKKSD 108

Query: 166 CFLFANGLSMLLLARVLQGLAVGMFNGVAVSAMTELHKANSKRQAAYLAALLVTAGNALG 225
             L     ++                     +      +     A         +   L 
Sbjct: 109 ELLKWARKNLQTTGCESWPKKCPKPEAYLQGSEDSQVASEIFLCAIAWILHHEISHVVLQ 168

Query: 226 PVLSGILAEYTPWPTRMPFLVHLLLVVPAVIGLLLVRIR---SEPAGTASLHW-PR--VP 279
             L                    +L             +           +         
Sbjct: 169 HPLVTTAFSTQEEREADSHATKWILGNLYES--APELKKRALGIATAVLCIQSLEVENYF 226

Query: 280 AGIRGAFYTASLTSFLVWGVVSLFMSVVPTYLGVWVDRTXXXXXXXXXXXXXXXXXXXQF 339
                           +         ++     V +                        
Sbjct: 227 CLQNTHPAAYERIYSNISCYPVGNEELIEALCTVMLQYLFHGKNINVNLDGESFSSILGD 286

Query: 340 TLGKLPLLRMMTXXXXXXXXXXXXXXXXXRFHSLIILFASILLVGMGHGPLYAGSLAYVN 399
                                                                       
Sbjct: 287                                                              346

Query: 400 AIAPSEARGDTVSFFYTGTYIGVA 423
                                   
Sbjct: 347                          370


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.326    0.139    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 26,773,147
Number of extensions: 991566
Number of successful extensions: 5234
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 5274
Number of HSP's successfully gapped: 14
Length of query: 442
Length of database: 38,378,431
Length adjustment: 109
Effective length of query: 333
Effective length of database: 25,807,025
Effective search space: 8593739325
Effective search space used: 8593739325
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 117 (49.7 bits)