BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0523.0013.p (626 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1879 [KT] COG3829 Transcriptional regulator containing PAS, AA... 264 4e-70 CAC0459 [KT] COG3829 Transcriptional regulator containing PAS, A... 258 1e-68 BS_yqiR [KT] COG3829 Transcriptional regulator containing PAS, A... 253 7e-67 BH0992 [KT] COG3829 Transcriptional regulator containing PAS, AA... 250 4e-66 BH2766 [KT] COG3829 Transcriptional regulator containing PAS, AA... 247 3e-65 >BH1879 [KT] COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Length = 555 Score = 264 bits (674), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 129/250 (51%), Positives = 183/250 (73%), Gaps = 8/250 (3%) Query: 327 FTFEDIVTDAEPMKRIIEKAKKMAKNDLSVLILGENGTGKELFAHSIHDYSHRSPFAFIA 386 ++F+DI+ +E + E A+++A D+++L+ GE+GTGKE+FA ++H S R+ F+A Sbjct: 239 YSFQDIIGSSEAIHFAREMARRIAGQDITILLRGESGTGKEMFAQAVHRESQRAQGPFVA 298 Query: 387 VNCSALPENLLESELFGYEEGAFTGARKGGKPGLFEQAHKGTIFLDEIGDISPHLQARLL 446 +NC+A+P+NLLESELFGYE GAFTGA++ GK G FE AH GTIFLDEIGD+S HLQA+LL Sbjct: 299 INCAAIPDNLLESELFGYESGAFTGAQRQGKAGRFELAHGGTIFLDEIGDMSLHLQAKLL 358 Query: 447 RVIQQKEILKVGGTRLLPVDVRVIAATNRNLAELVKSGGFREDLYYRLKVLQIEIVPLRE 506 RV+Q++++ +VGGT+ + VDVR+IAAT+RNL E+V+ FREDLYYRL V+ I I P+RE Sbjct: 359 RVLQERKVERVGGTQSVYVDVRIIAATHRNLEEMVQKKTFREDLYYRLNVIPITIPPVRE 418 Query: 507 RKEDIPRLIRYFLARRGITRKLPPELSVALAAHD------WPGNIRELENTVEYIAIM-N 559 RKED+P LI YF+ R K P+ + A+D WPGN+RE+ N VE++ + Sbjct: 419 RKEDLPILIEYFMKRLSNKEKKQPKY-FSKDAYDLIFRYPWPGNVREIVNMVEHVIYLET 477 Query: 560 GEDFSVEDLP 569 G+ + + LP Sbjct: 478 GDLITADSLP 487 >CAC0459 [KT] COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Length = 627 Score = 258 bits (660), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 127/247 (51%), Positives = 176/247 (71%), Gaps = 12/247 (4%) Query: 320 DKGHTSRFTFEDIVTDAEPMKRIIEKAKKMAKNDLSVLILGENGTGKELFAHSIHDYSHR 379 +KG +++ F+DI+T + M + + A +K D S+LI GE+G+GKELFA SIH+ S R Sbjct: 308 EKGFVAKYNFDDILTQDKNMIELKKLALLYSKTDSSILIQGESGSGKELFAQSIHNSSPR 367 Query: 380 SPFAFIAVNCSALPENLLESELFGYEEGAFTGARKGGKPGLFEQAHKGTIFLDEIGDISP 439 F+A+NC+ALPE+LLESELFGYE G+FTGA+K GK GLFE AH GTIFLDEIG++S Sbjct: 368 KNGPFVAINCAALPEHLLESELFGYEGGSFTGAKKEGKQGLFELAHNGTIFLDEIGELSK 427 Query: 440 HLQARLLRVIQQKEILKVGGTRLLPVDVRVIAATNRNLAELVKSGGFREDLYYRLKVLQI 499 LQA+LLRV+++KEI+ +GG +++PVD+R+I++TNRNL +++G FREDLYYRL V + Sbjct: 428 PLQAQLLRVLEEKEIMHIGGDKIIPVDIRIISSTNRNLLNSIENGTFREDLYYRLNVFNL 487 Query: 500 EIVPLRERKEDIPRLIRYFLA--------RRGITRKLPPELSVALAAHDWPGNIRELENT 551 + PLRER +DI L +FL R I ++ P L A++WPGN REL N Sbjct: 488 TLPPLRERGKDIEILAEHFLENTHNFSSNRSKILNQITP----FLMAYNWPGNTRELSNV 543 Query: 552 VEYIAIM 558 +E I++ Sbjct: 544 MERISLF 550 >BS_yqiR [KT] COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Length = 692 Score = 253 bits (646), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 128/233 (54%), Positives = 174/233 (74%), Gaps = 5/233 (2%) Query: 325 SRFTFEDIVTDAEPMKRIIEKAKKMAKNDLSVLILGENGTGKELFAHSIHDYSHRSPFAF 384 +++TF+DI+ +E M +E+AK AK ++L+ GE+GTGKELFAH+IH+ S R F Sbjct: 361 AKYTFDDIIGKSEQMLVALEQAKLGAKTPATILLRGESGTGKELFAHAIHNESDRKYNKF 420 Query: 385 IAVNCSALPENLLESELFGYEEGAFTGARKGGKPGLFEQAHKGTIFLDEIGDISPHLQAR 444 I VNC+AL ENLLESELFGYE+GAF+GA++GGK GLFE+A+ G+IFLDEIG+++ ++QA+ Sbjct: 421 IRVNCAALSENLLESELFGYEDGAFSGAKRGGKKGLFEEANNGSIFLDEIGELTQNMQAK 480 Query: 445 LLRVIQQKEILKVGGTRLLPVDVRVIAATNRNLAELVKSGGFREDLYYRLKVLQIEIVPL 504 LLRV+Q+KEI++VGGT+ +PV+VRVIAATN N+ + + G FREDLYYR+ I I PL Sbjct: 481 LLRVLQEKEIVRVGGTKAIPVNVRVIAATNVNIEKAMADGTFREDLYYRINRYPISIPPL 540 Query: 505 RERKEDIP----RLIRYFLARRGITRK-LPPELSVALAAHDWPGNIRELENTV 552 R+R EDI RLI+ G K L + AL+A+ WPGN+RELEN + Sbjct: 541 RQRLEDIEALSVRLIQKINRDYGRNVKGLSQQALRALSAYHWPGNVRELENVL 593 >BH0992 [KT] COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Length = 454 Score = 250 bits (639), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 128/253 (50%), Positives = 170/253 (67%), Gaps = 4/253 (1%) Query: 328 TFEDIVTDAEPMKRIIEKAKKMAKNDLSVLILGENGTGKELFAHSIHDYSHRSPFAFIAV 387 T E IV+ +E M R++E ++AK D +VL+LGE G GK IH+ S R F + Sbjct: 149 TLEGIVSKSEQMTRLMELIHRVAKVDSTVLVLGETGVGKSKIVKLIHELSDRENQRFYEI 208 Query: 388 NCSALPENLLESELFGYEEGAFTGARKGGKPGLFEQAHKGTIFLDEIGDISPHLQARLLR 447 NC+A+PE L+ESELFGYE GAFTGA + GK GLFE A+ GT+FLDEI ++ HLQ +LL+ Sbjct: 209 NCAAIPEQLIESELFGYEAGAFTGASRHGKKGLFELANGGTLFLDEIAEMPLHLQGKLLQ 268 Query: 448 VIQQKEILKVGGTRLLPVDVRVIAATNRNLAELVKSGGFREDLYYRLKVLQIEIVPLRER 507 V+Q+K +GG + VDVRVIAATN+ L ++V+ G FR DL+YRL+V+ + I PLRER Sbjct: 269 VLQEKSFRPIGGQAMQLVDVRVIAATNQELEQMVEQGQFRRDLFYRLQVIPVHIAPLRER 328 Query: 508 KEDIPRLIRYFL----ARRGITRKLPPELSVALAAHDWPGNIRELENTVEYIAIMNGEDF 563 KEDI L+ YFL R G KL P+ AL ++ WPGN+RELEN +E + + + + Sbjct: 329 KEDILPLVYYFLDHYNNRYGRDVKLSPKALDALYSYLWPGNVRELENLMERLVVTSDQMV 388 Query: 564 SVEDLPFETNSPP 576 EDLPF T S P Sbjct: 389 VAEDLPFHTESKP 401 >BH2766 [KT] COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Length = 681 Score = 247 bits (631), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 121/232 (52%), Positives = 169/232 (72%), Gaps = 7/232 (3%) Query: 325 SRFTFEDIVTDAEPMKRIIEKAKKMAKNDLSVLILGENGTGKELFAHSIHDYSHRSPFAF 384 +++TFEDI+ + + +++AK A ++L+ GE+GTGKELFAH+IH+ S R F Sbjct: 360 AKYTFEDIIGSSAEFQVAVKQAKLAASTPATILLRGESGTGKELFAHAIHNASSRKYNKF 419 Query: 385 IAVNCSALPENLLESELFGYEEGAFTGARKGGKPGLFEQAHKGTIFLDEIGDISPHLQAR 444 I VNC+AL E LLESELFGYEEGAF+GA++GGK GLFE+A+ G+IFLDEIG++S QA+ Sbjct: 420 IRVNCAALSETLLESELFGYEEGAFSGAKRGGKRGLFEEANHGSIFLDEIGELSSSTQAK 479 Query: 445 LLRVIQQKEILKVGGTRLLPVDVRVIAATNRNLAELVKSGGFREDLYYRLKVLQIEIVPL 504 LRV+Q+KEI++VGGT+ +P+DVRVIAATN NL + ++ FREDL+YRL + I I L Sbjct: 480 FLRVLQEKEIVRVGGTKAIPIDVRVIAATNVNLEKSIQDKTFREDLFYRLNKMPIYIPAL 539 Query: 505 RERKEDIPRLIRYFLAR------RGITRKLPPELSVALAAHDWPGNIRELEN 550 +ER +DIP L+ Y L++ R + L++ ++ H WPGN+RELEN Sbjct: 540 KERLDDIPDLVDYLLSKLNADYGRNVEGVTVEALNLLMSYH-WPGNVRELEN 590 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.138 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 43,108,530 Number of extensions: 1770739 Number of successful extensions: 4821 Number of sequences better than 1.0e-05: 145 Number of HSP's gapped: 4541 Number of HSP's successfully gapped: 145 Length of query: 626 Length of database: 38,378,431 Length adjustment: 112 Effective length of query: 514 Effective length of database: 25,461,023 Effective search space: 13086965822 Effective search space used: 13086965822 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 119 (50.4 bits)