BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0523.0011.p (500 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_tlpB [NT] COG0840 Methyl-accepting chemotaxis protein 129 1e-29 BS_mcpA [NT] COG0840 Methyl-accepting chemotaxis protein 125 1e-28 BS_tlpA [NT] COG0840 Methyl-accepting chemotaxis protein 122 9e-28 BS_mcpB [NT] COG0840 Methyl-accepting chemotaxis protein 108 3e-23 BH0876_2 [NT] COG0840 Methyl-accepting chemotaxis protein 97 4e-20 >BS_tlpB [NT] COG0840 Methyl-accepting chemotaxis protein Length = 83 Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 0/353 (0%), Positives = 0/353 (0%) Query: 148 PVKELFKAIDEVSSGNLHVRLSTERSDDFGELNRKFTKMAAELRNMISGVKDKAVQAAAS 207 Sbjct: 308 367 Query: 208 SQEMADTVARNVDEHKIVGAAVERVXXXXXXXXXXXXXXXRVMEEMSKGIQSIAETAYRV 267 Sbjct: 368 427 Query: 268 SXXXXXXXXXXXXXXXXIRKIVDQMSAISESVNLSAEKIKVLXXXXXXXXXXXXXXTGLA 327 Sbjct: 428 487 Query: 328 SQTNXXXXXXXXXXXXXXXXXXXXXXXXEEVRKLADQSGQAAYRISGIIENIHRDTRQSA 387 Sbjct: 488 547 Query: 388 ELMQAGLLEVGAGMELSKQTDEVFRRITEVIRSVSAQTEDMSSVTEQMXXXXXXXXXXXX 447 Sbjct: 548 607 Query: 448 XXXXIARASAVGAAELSKSSTYQLASLNDISESAEHLSRMSSELEALTSKFKI 500 Sbjct: 608 660 >BS_mcpA [NT] COG0840 Methyl-accepting chemotaxis protein Length = 661 Score = 125 bits (315), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 90/364 (24%), Positives = 166/364 (45%) Query: 137 VQYWLTRWTLAPVKELFKAIDEVSSGNLHVRLSTERSDDFGELNRKFTKMAAELRNMISG 196 V + R P+K+L + +S G+L + D+ GEL + F MA+ LR++I Sbjct: 297 VMTLIIRSITTPLKQLVGSSKRISEGDLTETIDIRSKDELGELGKSFNNMASSLRSLIHA 356 Query: 197 VKDKAVQAAASSQEMADTVARNVDEHKIVGAAVERVXXXXXXXXXXXXXXXRVMEEMSKG 256 ++D AASS+E+ + A+ + + A+E+ + +M+ G Sbjct: 357 IQDSVDNVAASSEELTASAAQTSKATEHITLAIEQFSNGNEKQNENIETAAEHIYQMNDG 416 Query: 257 IQSIAETAYRVSXXXXXXXXXXXXXXXXIRKIVDQMSAISESVNLSAEKIKVLXXXXXXX 316 + ++A+ + ++ + + V QM+ I +SV + + ++ L Sbjct: 417 LTNMAQASEVITDSSVQSTEIASEGGKLVHQTVGQMNVIDKSVKEAEQVVRGLETKSKDI 476 Query: 317 XXXXXXXTGLASQTNXXXXXXXXXXXXXXXXXXXXXXXXEEVRKLADQSGQAAYRISGII 376 G+A QTN EEVRKLA QS +A I G+I Sbjct: 477 TNILRVINGIADQTNLLALNAAIEAARAGEYGRGFSVVAEEVRKLAVQSADSAKEIEGLI 536 Query: 377 ENIHRDTRQSAELMQAGLLEVGAGMELSKQTDEVFRRITEVIRSVSAQTEDMSSVTEQMX 436 I ++ S + Q+ EV G++++ +T+ F+RI+E+ ++ + ++MS+ +Q+ Sbjct: 537 IEIVKEINTSLGMFQSVNQEVQTGLDITDKTEMSFKRISEMTNQIAGELQNMSATVQQLS 596 Query: 437 XXXXXXXXXXXXXXXIARASAVGAAELSKSSTYQLASLNDISESAEHLSRMSSELEALTS 496 I++ S+ +++ S+ QLAS+ +IS SAE LS M+ EL +T Sbjct: 597 ASSEEVSGASEHIASISKESSAHIQDIAASAEEQLASMEEISSSAETLSSMAEELRDMTK 656 Query: 497 KFKI 500 +FKI Sbjct: 657 RFKI 660 >BS_tlpA [NT] COG0840 Methyl-accepting chemotaxis protein Length = 83 Score = 122 bits (307), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 0/365 (0%), Positives = 0/365 (0%), Gaps = 6/365 (1%) Query: 139 YWLTRWTLAPVKELFKAIDEVSSGNLHVRLSTERSDDFGELNRKFTKMAAELRNMISGVK 198 Sbjct: 299 358 Query: 199 DKAVQAAASSQEM---ADTVARNVDEHKIVGAAVERVXXXXXXXXXXXXXXXRVMEEMSK 255 Sbjct: 359 --- 415 Query: 256 GIQSIAETAYRVSXXXXXXXXXXXXXXXXIRKIVDQMSAISESVNLSAEKIKVLXXXXXX 315 Sbjct: 416 475 Query: 316 XXXXXXXXTGLASQTNXXXXXXXXXXXXXXXXXXXXXXXXEEVRKLADQSGQAAYRISGI 375 Sbjct: 476 535 Query: 376 IENIHRDTRQSAELMQAGLLEVGAGMELSKQTDEVFRRITEVIRSVSAQTEDMSSVTEQM 435 Sbjct: 536 595 Query: 436 XXXXXXXXXXXXXXXXIARASAVGAAELSKSSTYQLASLNDISESAEHLSRMSSELEALT 495 Sbjct: 596 655 Query: 496 SKFKI 500 Sbjct: 656 660 >BS_mcpB [NT] COG0840 Methyl-accepting chemotaxis protein Length = 662 Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 83/361 (22%), Positives = 159/361 (44%) Query: 140 WLTRWTLAPVKELFKAIDEVSSGNLHVRLSTERSDDFGELNRKFTKMAAELRNMISGVKD 199 ++ R P+K L ++ +S G+L + D+ GEL F +M LR++IS +++ Sbjct: 301 FIVRSITKPLKRLVQSSKTISRGDLTETIEIHSKDELGELGESFNEMGQSLRSLISAIQN 360 Query: 200 KAVQAAASSQEMADTVARNVDEHKIVGAAVERVXXXXXXXXXXXXXXXRVMEEMSKGIQS 259 AASS+++ + + + + A+E+ + M++G+Q Sbjct: 361 SVNNVAASSEQLTASAGQTSKATEHITMAIEQFSNGNEEQSRKVESSSHQLNLMNEGLQQ 420 Query: 260 IAETAYRVSXXXXXXXXXXXXXXXXIRKIVDQMSAISESVNLSAEKIKVLXXXXXXXXXX 319 +++T+ ++ +++ QM++I++SV + +K L Sbjct: 421 VSQTSSDITKASIQSTEIAGTGEKFVQQTGGQMNSINQSVQQAEAVVKGLEGKSKDITSI 480 Query: 320 XXXXTGLASQTNXXXXXXXXXXXXXXXXXXXXXXXXEEVRKLADQSGQAAYRISGIIENI 379 G+A QTN EEVRKLA QS +A I +I+ I Sbjct: 481 LRVINGIADQTNLLALNAAIEAARAGESGRGFSVVAEEVRKLAVQSADSAKEIEKLIQEI 540 Query: 380 HRDTRQSAELMQAGLLEVGAGMELSKQTDEVFRRITEVIRSVSAQTEDMSSVTEQMXXXX 439 + S + + EV +G+ ++ T E F+ I + ++ + + M+S EQ+ Sbjct: 541 VAEIDTSLHMFKEVNQEVQSGLVVTDNTKESFQSIFSMTNEIAGKLQTMNSTVEQLSDRS 600 Query: 440 XXXXXXXXXXXXIARASAVGAAELSKSSTYQLASLNDISESAEHLSRMSSELEALTSKFK 499 +++ S+ +++ S+ QLAS+ +IS SA L++M+ EL LT +FK Sbjct: 601 QHVSAAVSGIADVSKESSASIQDIAASAEEQLASMEEISSSATTLAQMAEELRDLTKQFK 660 Query: 500 I 500 I Sbjct: 661 I 661 >BH0876_2 [NT] COG0840 Methyl-accepting chemotaxis protein Length = 359 Score = 97.4 bits (241), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 86/356 (24%), Positives = 155/356 (43%), Gaps = 5/356 (1%) Query: 148 PVKELFKAIDEVSSGNLHV-RLSTERSDDFGELNRKFTKMAAELRNMISGVKDKAVQAAA 206 P+ L K V+ G+L R+ + D+ G+LN F M LR +I + A Q A Sbjct: 6 PLARLTKVARHVADGDLTTERVKIKNRDEIGQLNESFEAMKENLRGLIQRILQNADQVAV 65 Query: 207 SSQEMADTVARNVDEHKIVGAAVERVXXXXXXXXXXXXXXXRVMEEMSKGIQSIAETAYR 266 SS++++ + + + +A+E + + +EEM++ + + + A + Sbjct: 66 SSEQLSASAEQTSSATEQTTSAIESISRGADMQTSAAQTSVKTLEEMNQIVTEMTDGAKQ 125 Query: 267 VSXXXXXXXXXXXXXXXXIRKIVDQMSAISESVNLSAEKIKVLXXXXXXXXXXXXXXTGL 326 + +++ V+ M +I ESV S + I+ L + Sbjct: 126 IESNANLTLTYANEGDTLVKETVENMQSIDESVKGSDQAIQTLSKRSEDIVEILDVIQSI 185 Query: 327 ASQTNXXXXXXXXXXXXXXXXXXXXXXXXEEVRKLADQSGQAAYRISGIIENIHRDTRQS 386 A QTN EEVRKLA++S Q+ +I +I+ + ++T S Sbjct: 186 AEQTNLLALNAAIEAARAGEHGKGFAVVAEEVRKLAEESSQSTKKIHDLIDEMVKETNNS 245 Query: 387 AELMQAGLL--EVGAGMELSKQTDEVFRRITEVIRSVSAQTEDMSSVTEQMXXXXXXXXX 444 E M GL+ EV G++ + QT E F I I+ V++Q E M+ VT ++ Sbjct: 246 VEKM--GLVKEEVSVGLKTAAQTSEKFHSIVASIQGVTSQVEAMNRVTREVAEKSTEVAT 303 Query: 445 XXXXXXXIARASAVGAAELSKSSTYQLASLNDISESAEHLSRMSSELEALTSKFKI 500 +A SA ++ +S + LAS+ +++ SA L+ M+ L+ +FK+ Sbjct: 304 SVQNMASVAEESAEQSSSVSAVAEETLASMQEVTASANQLTEMAETLQEAIKQFKL 359 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.313 0.125 0.330 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 23,792,749 Number of extensions: 753956 Number of successful extensions: 2888 Number of sequences better than 1.0e-05: 629 Number of HSP's gapped: 2282 Number of HSP's successfully gapped: 629 Length of query: 500 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 389 Effective length of database: 25,576,357 Effective search space: 9949202873 Effective search space used: 9949202873 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 118 (50.1 bits)