BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0522.0001.p
         (124 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CC2382 [M] COG1004 Predicted UDP-glucose 6-dehydrogenase               83   8e-17
CC2379 [M] COG1004 Predicted UDP-glucose 6-dehydrogenase               83   8e-17
MJ1054_1 [M] COG1004 Predicted UDP-glucose 6-dehydrogenase             74   5e-14
BS_tuaD [M] COG1004 Predicted UDP-glucose 6-dehydrogenase              71   4e-13
mlr5265 [M] COG1004 Predicted UDP-glucose 6-dehydrogenase              71   5e-13

>CC2382 [M] COG1004 Predicted UDP-glucose 6-dehydrogenase
          Length = 435

 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 38/64 (59%), Positives = 50/64 (78%)

Query: 52  FDVVSNPEFLREGSAVQDFTHPDRVVIGAESDRAFEVMKEVYRVLYINETPFVETNIETA 111
           F VVSNPEFLREG+A++DF  PDRVV+G + +RA  VM+++YR L +NETP V T   T+
Sbjct: 144 FAVVSNPEFLREGAAIEDFKRPDRVVVGTDDERAQAVMRDLYRPLSLNETPIVFTGRRTS 203

Query: 112 EMIK 115
           E+IK
Sbjct: 204 ELIK 207


>CC2379 [M] COG1004 Predicted UDP-glucose 6-dehydrogenase
          Length = 435

 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 38/64 (59%), Positives = 50/64 (78%)

Query: 52  FDVVSNPEFLREGSAVQDFTHPDRVVIGAESDRAFEVMKEVYRVLYINETPFVETNIETA 111
           F VVSNPEFLREG+A++DF  PDRVV+G + +RA  VM+++YR L +NETP V T   T+
Sbjct: 144 FAVVSNPEFLREGAAIEDFKRPDRVVVGTDDERAQAVMRDLYRPLSLNETPIVFTGRRTS 203

Query: 112 EMIK 115
           E+IK
Sbjct: 204 ELIK 207


>MJ1054_1 [M] COG1004 Predicted UDP-glucose 6-dehydrogenase
          Length = 262

 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 49/70 (70%), Gaps = 3/70 (4%)

Query: 49  EYAFDVVSNPEFLREGSAVQDFTHPDRVVIGAE---SDRAFEVMKEVYRVLYINETPFVE 105
           +Y  DVVSNPEFLREG AV DF +P+RV++G E   + +  E+M+EVY+       PFV 
Sbjct: 136 DYNVDVVSNPEFLREGIAVYDFFNPERVILGFENLNNKKPIEIMEEVYKYFKDKNIPFVI 195

Query: 106 TNIETAEMIK 115
           TN ETAE+IK
Sbjct: 196 TNWETAELIK 205


>BS_tuaD [M] COG1004 Predicted UDP-glucose 6-dehydrogenase
          Length = 461

 Score = 71.2 bits (173), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/71 (49%), Positives = 53/71 (74%), Gaps = 4/71 (5%)

Query: 45  SRGLEYAFDVVSNPEFLREGSAVQDFTHPDRVVIGAESDRAFEVMKEVYRVLYINETPFV 104
           S+G  Y+FDVVSNPEFLREGSA+ D  + +R VIG+ S +A  +++E+++  +    P +
Sbjct: 139 SKG-RYSFDVVSNPEFLREGSAIHDTMNMERAVIGSTSHKAAAIIEELHQPFH---APVI 194

Query: 105 ETNIETAEMIK 115
           +TN+E+AEMIK
Sbjct: 195 KTNLESAEMIK 205


>mlr5265 [M] COG1004 Predicted UDP-glucose 6-dehydrogenase
          Length = 443

 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 49/81 (60%), Gaps = 1/81 (1%)

Query: 36  KAMIQETLISRGLE-YAFDVVSNPEFLREGSAVQDFTHPDRVVIGAESDRAFEVMKEVYR 94
           KA I ETL  RG E  +FDV SNPEFL+EGSAV D   PDR+++G  S+    VM+E+Y 
Sbjct: 131 KAKIAETLKKRGREDLSFDVASNPEFLKEGSAVADCMRPDRIIVGTSSEGTEAVMRELYA 190

Query: 95  VLYINETPFVETNIETAEMIK 115
               N    +  ++ +AE  K
Sbjct: 191 PFNRNHEKMIVMDVRSAEFTK 211


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.322    0.137    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 5,649,843
Number of extensions: 170769
Number of successful extensions: 341
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 334
Number of HSP's successfully gapped: 15
Length of query: 124
Length of database: 38,378,431
Length adjustment: 90
Effective length of query: 34
Effective length of database: 27,998,371
Effective search space: 951944614
Effective search space used: 951944614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)