BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0520.0053.p (336 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0028 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel trans... 384 e-107 BH0350 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel trans... 350 2e-96 STM0501 [O] COG0330 Membrane protease subunits, stomatin/prohibi... 348 5e-96 TM0501 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel trans... 348 5e-96 BH3646 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel trans... 342 4e-94 >BH0028 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Length = 347 Score = 384 bits (987), Expect = e-107, Method: Compositional matrix adjust. Identities = 184/320 (57%), Positives = 239/320 (74%), Gaps = 5/320 (1%) Query: 6 ILEIKELRTLFHTERGTVPAVDGVSLQIEAGEIVGIVGESGCGKSVTAQSVLRLLDEKRQ 65 ILE+++LRT F TE V AVDGV+ + G+ +GIVGESG GKS+T+ S+L+L+ E + Sbjct: 12 ILEVRDLRTSFFTEAFEVKAVDGVTFSVPKGKTLGIVGESGSGKSITSLSILKLIQEPGK 71 Query: 66 VSYEGEIRYNGQDLLKLTPKQMRDVRGNAISMVFQDPLSSLNPVYTIGEQIVETLRLHQS 125 V GEI + G++L+ MR +RGN ISM+FQ+P++SLNPVYT+G+QI E+ R+H+ Sbjct: 72 V-VGGEINFKGENLVTKNEAYMRKIRGNEISMIFQEPMTSLNPVYTVGQQISESFRIHEK 130 Query: 126 IGKKAAWARAVELLKLTGIPAPERRVHDYPHQLSGGMRQRVMIAIALACEPKLLVXXXDE 185 +GKK A R+V++LKL GIP+PE+RVH YPH+LSGGMRQRVMIA+ALAC P+LL+ DE Sbjct: 131 LGKKEALKRSVDMLKLVGIPSPEKRVHQYPHELSGGMRQRVMIAMALACNPELLI--ADE 188 Query: 186 PTTALDVTIQAQILDLLTSLNKKLGMSVMFITHDLGVVAEVCSRVVVMYLGQVVEMADVR 245 PTTALDVTIQAQIL+L+ L +LGMS++ ITHDLGVVAE C V VMY G+VVE ADV+ Sbjct: 189 PTTALDVTIQAQILELMKDLQDRLGMSIIMITHDLGVVAETCDYVAVMYCGKVVEYADVK 248 Query: 246 TLFAQPLHPYTRGLMRAVPRLDGD-RSRELEAIQGSVPSLHQIPEGCRFAPRCAYADDQC 304 TLF P HPYT GL+ ++PR D D EL I+G+VPS +PEGCRFAPRC +A D C Sbjct: 249 TLFKNPRHPYTVGLLNSLPRHDIDLEDEELSVIKGNVPSPADMPEGCRFAPRCPFASDIC 308 Query: 305 RAKMPALEVLPGTTTAVRCW 324 + ++P LE +RCW Sbjct: 309 KERLPDLET-DENGNQIRCW 327 >BH0350 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Length = 329 Score = 350 bits (898), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 173/328 (52%), Positives = 236/328 (71%), Gaps = 8/328 (2%) Query: 6 ILEIKELRTLFHTERGTVPAVDGVSLQIEAGEIVGIVGESGCGKSVTAQSVLRLLDEKRQ 65 +L ++EL+T F+TE G VP+V+GVS +++ GE V +VGESGCGKSVT+ S++ L+ + Sbjct: 6 LLSVRELKTYFYTESGAVPSVNGVSFEVKHGETVAVVGESGCGKSVTSLSIMGLVRSPGK 65 Query: 66 VSYEGEIRYNGQDLLKLTPKQMRDVRGNAISMVFQDPLSSLNPVYTIGEQIVETLRLHQS 125 + G+IR+NGQDL ++ ++ R +RGN +SM+FQ+PL+SLNP++TIG Q+ E + HQ Sbjct: 66 I-VGGDIRFNGQDLTTISEREYRKLRGNELSMIFQEPLTSLNPLFTIGNQLGEVILQHQQ 124 Query: 126 IGKKAAWARAVELLKLTGIPAPERRVHDYPHQLSGGMRQRVMIAIALACEPKLLVXXXDE 185 + K+ A + +E+LK GIP E+ YPHQLSGGMRQRVMIA+ALACEPKLL+ DE Sbjct: 125 VTKEEAKQKGIEMLKKVGIPRAEQVYRSYPHQLSGGMRQRVMIAMALACEPKLLI--ADE 182 Query: 186 PTTALDVTIQAQILDLLTSLNKKLGMSVMFITHDLGVVAEVCSRVVVMYLGQVVEMADVR 245 PTTALDVTIQAQIL L+ L K+ +++ ITHDLGVVAE+ V+VMY GQVVE ADV Sbjct: 183 PTTALDVTIQAQILQLMRKLVKENDTAILLITHDLGVVAEMADTVIVMYAGQVVEQADVF 242 Query: 246 TLFAQPLHPYTRGLMRAVPRLDGDRSRELEAIQGSVPSLHQIPEGCRFAPRCAYADDQCR 305 TLFA P HPYT+GL+ + P + +L++I+G+VP+ +P+GCRF PRC +A +QC Sbjct: 243 TLFATPAHPYTQGLLASTPNIHAS-GEKLQSIEGTVPTHETMPKGCRFFPRCLHATEQCV 301 Query: 306 AKMPALEVLPGTTTAVRCWHADEMSGKE 333 + P L + G VRCW D GKE Sbjct: 302 HQEPPL-MKTGRGQHVRCWLFD---GKE 325 >STM0501 [O] COG0330 Membrane protease subunits, stomatin/prohibitin homologs Length = 305 Score = 348 bits (894), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 0/325 (0%), Positives = 0/325 (0%), Gaps = 9/325 (2%) Query: 9 IKELRTLFHTERGTVPAVDGVSLQIEAGEIVGIVGESGCGKSVTAQSVLRLLDEKRQVSY 68 + L + + + V G V+ +D + Sbjct: 1 MLILIPILIFVALVIVGAGVKIVPQGYQWTVERFGRYTKTLQPGLSLVVPFMDRIGRK-I 59 Query: 69 EGEIRYNGQDLLKLTPKQMRDVRGNAISMVFQDPLSSLNPVYTIGEQIVETLRLHQSIGK 128 + ++ K +V +A+ + + E + L + Sbjct: 60 NMMEQVLDIPSQEVISKDNANVTIDAVCFIQVIDAPRAAYEVSNLELAIINLTMTNIRTV 119 Query: 129 KAAWARAVELLKLTGIPAPERRVHDYPHQLSGGMRQRVMIAIALACEPKLLVXXXDEPTT 188 + L + I + D G R+ I + + Sbjct: 120 LGSMELDEMLSQRDSINTRLLHIVDEATNPWGIKVTRIEIRDVRPPAELISS--MNAQMK 177 Query: 189 ALDVTIQAQILDLLTSLNKKLGMSVMFITHDLGVVAEVCSRVVVMYLGQVVEMADVRTLF 248 A + + L + L E S + + A+ R Sbjct: 178 AERTKRAYILEAEGVRQAEILKAEGEKQSQILKAEGERQSAFLQAEARERSAEAEARATQ 237 Query: 249 AQPLHPYTRGLMRAVPRLDGDRSRELEAIQGSVPSLHQIPEGCRFAPRCAYADD-QCRAK 307 + + + GS + + + K Sbjct: 238 MVSEAIAAGDIQAINYFVAQKYTE-ALQQIGSANNSKVVMMPLDASSLMGAIAGISELVK 296 Query: 308 MPALEVLPGTTTAVRC--WHA-DEM 329 Sbjct: 297 - 320 >TM0501 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Length = 327 Score = 348 bits (894), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 170/325 (52%), Positives = 239/325 (73%), Gaps = 9/325 (2%) Query: 9 IKELRTLFHTERGTVPAVDGVSLQIEAGEIVGIVGESGCGKSVTAQSVLRLLDEKRQVSY 68 ++ L+T F+TE G V AVDGVS ++ GE +GIVGESG GKSVT+ S++RLLD+ ++ Sbjct: 1 MENLKTYFYTEDGVVKAVDGVSFEVREGETLGIVGESGSGKSVTSLSIMRLLDQNGKI-V 59 Query: 69 EGEIRYNGQDLLKLTPKQMRDVRGNAISMVFQDPLSSLNPVYTIGEQIVETLRLHQSIGK 128 +G+I + G++LL+L+ +MR +RG I+M+FQ+P+ +LNPV+TIG+QI+E + LHQ++ + Sbjct: 60 DGKIIFKGRNLLELSENEMRKIRGKEIAMIFQEPMVALNPVFTIGDQIMEAIILHQNVSE 119 Query: 129 KAAWARAVELLKLTGIPAPERRVHDYPHQLSGGMRQRVMIAIALACEPKLLVXXXDEPTT 188 K A A++LL+ GIP PE+RV +YPHQLSGGMRQR MIA+AL+C P LL+ DEPTT Sbjct: 120 KEARKMAIDLLRKVGIPEPEKRVDEYPHQLSGGMRQRAMIAMALSCRPSLLI--ADEPTT 177 Query: 189 ALDVTIQAQILDLLTSLNKKLGMSVMFITHDLGVVAEVCSRVVVMYLGQVVEMADVRTLF 248 ALDVTIQAQIL+L+ L K+ GM+++ ITHD+GVVAE+ +V VMY G+VVE DV+T+F Sbjct: 178 ALDVTIQAQILELMKELQKEYGMAIILITHDMGVVAEMSDKVAVMYAGKVVEYGDVKTIF 237 Query: 249 AQPLHPYTRGLMRAVPRLDGDRSRELEAIQGSVPSLHQIPEGCRFAPRCAYADD-QCRAK 307 +P HPYT L+ ++PR+D ++ R L++I G+VP P GC+F PRC + + +C + Sbjct: 238 TEPKHPYTYALLESIPRIDVEQER-LKSIPGNVPDPLNFPPGCKFHPRCEFFEKGKCDVE 296 Query: 308 MPALEVLPGTTTAVRC--WHA-DEM 329 P LE L G VRC W DEM Sbjct: 297 EPELEDLDGNHK-VRCFFWQKLDEM 320 >BH3646 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Length = 329 Score = 342 bits (878), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 164/323 (50%), Positives = 237/323 (73%), Gaps = 4/323 (1%) Query: 6 ILEIKELRTLFHTERGTVPAVDGVSLQIEAGEIVGIVGESGCGKSVTAQSVLRLLDEKRQ 65 +LE+ +LRT F T++G VPAVDGVSL++ GEI+GIVGESGCGKSVT+ S+++L+ Sbjct: 5 VLELDKLRTHFFTDQGEVPAVDGVSLRLHQGEIIGIVGESGCGKSVTSLSIMQLVPNPPG 64 Query: 66 VSYEGEIRYNGQDLLKLTPKQMRDVRGNAISMVFQDPLSSLNPVYTIGEQIVETLRLHQS 125 G + + G+DL++++PK+M+ +RGN I+M+FQ+P++SLNP++TIG Q++E +R H+ Sbjct: 65 KIMSGHVYFKGEDLVQVSPKRMKQIRGNDIAMIFQEPMTSLNPLFTIGNQLIEAIRNHRK 124 Query: 126 IGKKAAWARAVELLKLTGIPAPERRVHDYPHQLSGGMRQRVMIAIALACEPKLLVXXXDE 185 + K+ A +AV +L+ GIP + +YPHQLSGGMRQRVMIA+A+ C+PK+L+ DE Sbjct: 125 MTKQEARKQAVTMLERVGIPRADEIASEYPHQLSGGMRQRVMIAMAMCCDPKVLI--ADE 182 Query: 186 PTTALDVTIQAQILDLLTSLNKKLGMSVMFITHDLGVVAEVCSRVVVMYLGQVVEMADVR 245 PTTALDVTIQAQILDL+ LN+ +++ ITHDLGVVAE+C+RVVVMY GQVVE DVR Sbjct: 183 PTTALDVTIQAQILDLMRHLNEAHDTAILLITHDLGVVAELCNRVVVMYAGQVVEEGDVR 242 Query: 246 TLFAQPLHPYTRGLMRAVPRLDGDRSRELEAIQGSVPSLHQIPEGCRFAPRCAYADDQCR 305 + P HPYT+GL++++P++ ++S+ L +I G VP + GCRFA RC A ++C+ Sbjct: 243 MILKHPKHPYTKGLLKSLPKIH-EQSKRLYSIPGVVPKPGTVGHGCRFAARCEVAFERCK 301 Query: 306 AKMPALEVLPGTTTAVRCWHADE 328 P L+ + T RC+ +E Sbjct: 302 TTAPQLQQV-ATGHQCRCFLYEE 323 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.136 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 23,855,615 Number of extensions: 896120 Number of successful extensions: 9787 Number of sequences better than 1.0e-05: 1821 Number of HSP's gapped: 6455 Number of HSP's successfully gapped: 1966 Length of query: 336 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 229 Effective length of database: 26,037,693 Effective search space: 5962631697 Effective search space used: 5962631697 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 116 (49.3 bits)