BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0520.0052.p (240 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0030 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel trans... 194 1e-49 FN0398 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel trans... 183 2e-46 PAB0093 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 171 1e-42 BH3642 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel trans... 170 2e-42 MA1246 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel trans... 158 5e-39 >BH0030 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 301 Score = 194 bits (492), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 100/235 (42%), Positives = 145/235 (61%), Gaps = 3/235 (1%) Query: 2 DVVNRLSPPSGTHLFGTDNFGRDLLARVVYGIGMSALIGC-AVALGASAIGLVIGLYSGY 60 +V+N+L+ PS H FGTD+ GRD+ R+++G+ ++ +G +V LGA +G+++G+ SGY Sbjct: 68 NVMNKLAEPSAEHWFGTDHHGRDIFTRIIHGMSITLYVGFFSVVLGA-IVGVILGVVSGY 126 Query: 61 Y-KWLDQILMRIMDGLFAFPXXXXXXXXXXXXGPSSGNLILCLTIVFIPSIARIVRSAVL 119 Y + +D ++MRIMD L AFP G S N+I+ + I IP ARIVR + L Sbjct: 127 YGRLVDTVIMRIMDVLLAFPGILLALAIISILGGSINNVIIAVGIFSIPVFARIVRGSTL 186 Query: 120 VAKEQTYIEAMQALGASQTRMIWSHILPNTLPQLIVQGTXXXXXXXXXXXXLSFLGAGIP 179 ++ YI+A++ALGAS R+I+ HILPN L +IVQGT LSFLG G Sbjct: 187 AVRKLEYIDAVKALGASDARIIFKHILPNVLSPIIVQGTLSIATSILTASALSFLGLGAQ 246 Query: 180 APTPSLGNLLSDGKLYIYNSPWMTIFPGXXXXXXXXXMNLFGDGLRDLLDPHARR 234 P P G +LSDG+ Y+Y++P + +FPG N+FGDGLRD LDP ++ Sbjct: 247 PPIPEWGAMLSDGRNYMYDAPHVALFPGLAIVVVVLAFNIFGDGLRDALDPKSKN 301 >FN0398 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 289 Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 91/234 (38%), Positives = 140/234 (59%), Gaps = 1/234 (0%) Query: 2 DVVNRLSPPSGTHLFGTDNFGRDLLARVVYGIGMSALIGCAVALGASAIGLVIGLYSGYY 61 ++ RL PP+G H GTD FGRD+ AR+++G +S +G + +G ++G SGY+ Sbjct: 56 NLAERLMPPNGKHWLGTDEFGRDIFARLIHGARVSLKVGILAISISVVVGGILGAISGYF 115 Query: 62 K-WLDQILMRIMDGLFAFPXXXXXXXXXXXXGPSSGNLILCLTIVFIPSIARIVRSAVLV 120 +D ++MR++D A P GPS NL++ +++ ++P+ ARIVR++VL Sbjct: 116 GGVIDNVIMRVVDIFLAVPSILLAIAIVSALGPSMLNLMISISVSYVPNFARIVRASVLS 175 Query: 121 AKEQTYIEAMQALGASQTRMIWSHILPNTLPQLIVQGTXXXXXXXXXXXXLSFLGAGIPA 180 ++Q +IEA +A+GAS +R+I HI+PN+L +IVQGT LSF+G GI Sbjct: 176 IRDQEFIEAAKAIGASNSRIIMKHIIPNSLAPVIVQGTLGVAGAILSTAGLSFIGLGIQP 235 Query: 181 PTPSLGNLLSDGKLYIYNSPWMTIFPGXXXXXXXXXMNLFGDGLRDLLDPHARR 234 P P G++LS G+ Y+ + W+T FPG +NL GDGLRD LDP ++ Sbjct: 236 PAPEWGSMLSGGRQYLRYAWWVTTFPGVAIMITILSLNLLGDGLRDALDPRLKQ 289 >PAB0093 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 287 Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 88/228 (38%), Positives = 133/228 (58%), Gaps = 1/228 (0%) Query: 5 NRLSPPSGTHLFGTDNFGRDLLARVVYGIGMSALIGCAVALGASAIGLVIGLYSGYYK-W 63 +RL PP + FGTD FGRD+ +R+VYG ++ ++G VAL ++AIG+ +GL SGY+ Sbjct: 57 DRLKPPCEKYWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGK 116 Query: 64 LDQILMRIMDGLFAFPXXXXXXXXXXXXGPSSGNLILCLTIVFIPSIARIVRSAVLVAKE 123 +D+I+MR +D ++AFP GP N ++ + +V S AR+VR+ L KE Sbjct: 117 VDEIIMRAVDIVWAFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKE 176 Query: 124 QTYIEAMQALGASQTRMIWSHILPNTLPQLIVQGTXXXXXXXXXXXXLSFLGAGIPAPTP 183 + +IEA +A+G S R+++S+ILPN + ++V T LSFLG G P+P Sbjct: 177 ELFIEAARAIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSP 236 Query: 184 SLGNLLSDGKLYIYNSPWMTIFPGXXXXXXXXXMNLFGDGLRDLLDPH 231 G +LS ++Y+ +PW +IFPG N GDGLRD + P Sbjct: 237 DWGLMLSSARVYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQPE 284 >BH3642 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 306 Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 90/233 (38%), Positives = 127/233 (54%), Gaps = 1/233 (0%) Query: 2 DVVNRLSPPSGTHLFGTDNFGRDLLARVVYGIGMSALIGCAVALGASAIGLVIGLYSGYY 61 D +RL PS H FGTD+ GRD+ R+ YG +S +G GA +G ++G+ +GYY Sbjct: 73 DAASRLQSPSAEHWFGTDDLGRDVFTRIAYGAQLSLQVGFFAVAGALLVGTLLGVLAGYY 132 Query: 62 -KWLDQILMRIMDGLFAFPXXXXXXXXXXXXGPSSGNLILCLTIVFIPSIARIVRSAVLV 120 +WLD ++ RI D + AFP GPS N ++ + IV IP R+VRS V+ Sbjct: 133 GRWLDMLISRIFDIMLAFPSILLAIAIVAILGPSLHNAMVAIAIVNIPIFGRLVRSKVIS 192 Query: 121 AKEQTYIEAMQALGASQTRMIWSHILPNTLPQLIVQGTXXXXXXXXXXXXLSFLGAGIPA 180 + + +I A +A G +R+++ HILPN+L +IVQ T L FLG G A Sbjct: 193 LRAEEFIMAARAQGMKNSRILFHHILPNSLSPIIVQATLGFGTAILEAAALGFLGLGAQA 252 Query: 181 PTPSLGNLLSDGKLYIYNSPWMTIFPGXXXXXXXXXMNLFGDGLRDLLDPHAR 233 P G +L+D + YI +PW+ IFPG N+ GDGLRD LDP + Sbjct: 253 PLAEWGKMLADSRAYIQTAPWVAIFPGMSIMLVVLGFNMIGDGLRDALDPKMK 305 >MA1246 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 288 Score = 158 bits (400), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 87/233 (37%), Positives = 128/233 (54%), Gaps = 1/233 (0%) Query: 2 DVVNRLSPPSGTHLFGTDNFGRDLLARVVYGIGMSALIGCAVALGASAIGLVIGLYSGYY 61 D+ NRL PPS H+FGTD+ GRD+L V+YG S +G AV + ++G+V+G+ +GYY Sbjct: 48 DLQNRLQPPSSDHIFGTDHLGRDILTMVMYGARASLFVGFAVVSVSLSVGVVLGVLAGYY 107 Query: 62 K-WLDQILMRIMDGLFAFPXXXXXXXXXXXXGPSSGNLILCLTIVFIPSIARIVRSAVLV 120 WLD+I+MR+ D AFP G N++L L +V AR+ R + L Sbjct: 108 GGWLDEIIMRLTDSFLAFPSMFLALAITAFLGQGMENMMLALIVVEWTVFARVARGSTLD 167 Query: 121 AKEQTYIEAMQALGASQTRMIWSHILPNTLPQLIVQGTXXXXXXXXXXXXLSFLGAGIPA 180 K + Y+ A + +GAS + ++ HILPN + +++ T LSFLG G+ Sbjct: 168 VKTKGYVRASRWVGASNSYVMIKHILPNIISPVLIMATLGIGNVILAAAGLSFLGLGVQP 227 Query: 181 PTPSLGNLLSDGKLYIYNSPWMTIFPGXXXXXXXXXMNLFGDGLRDLLDPHAR 233 TP G +L+ G+ Y+ +PW+ +FPG N FGDGLRD LD + Sbjct: 228 STPEWGAMLNAGRTYVTTAPWLMLFPGLFIMITVLAFNYFGDGLRDALDQKMK 280 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.324 0.143 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 15,973,518 Number of extensions: 554529 Number of successful extensions: 3197 Number of sequences better than 1.0e-05: 181 Number of HSP's gapped: 2950 Number of HSP's successfully gapped: 185 Length of query: 240 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 137 Effective length of database: 26,499,029 Effective search space: 3630366973 Effective search space used: 3630366973 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 114 (48.5 bits)