BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0520.0050.p (314 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value yliC [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transpo... 223 4e-58 Z1055 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transp... 223 4e-58 ECs0910 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tran... 223 4e-58 BMEII0209 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tr... 222 6e-58 STM0850 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tran... 221 1e-57 >yliC [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 306 Score = 223 bits (567), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 116/284 (40%), Positives = 173/284 (60%), Gaps = 8/284 (2%) Query: 31 PGDPAAVMLGDGTNPETVAALRTQLGLDLPLLQQYTRWIGQALTGDLGDSFFMKQSVVQA 90 PGDPA ++ G + + + +R QLGLD PL Q+ +I A+ GD G S ++ V Sbjct: 31 PGDPARLIAGPEADAQVIELVRQQLGLDQPLYHQFWHYISNAVQGDFGLSMVSRRPVADE 90 Query: 91 LREHLGPTXXXXXXXXXXXXXXXXPLGIRAAVKRGEAADKMLTGFTLFGITVPGFVLSMF 150 + PT GI AAV R D++ + GI+ P F L M Sbjct: 91 IASRFMPTLWLTITSMVWAVIFGMAAGIIAAVWRNRWPDRLSMTIAVSGISFPAFALGML 150 Query: 151 TVLLFSVQLKWLPVSGYKPLSAGLWTHLKYLLLPALSLGVVQAAVLARVTRSAVLEVLGE 210 + +FSV+L WLP G A W H +LP+L+LG AAV+AR TR++ ++VL E Sbjct: 151 LIQVFSVELGWLPTVG-----ADSWQHY---ILPSLTLGAAVAAVMARFTRASFVDVLSE 202 Query: 211 NYIKTALSKGMSDRMIVYKHVLRNALIPILTVIGGSFGTLIAGAAVIETIFNIPGMGQML 270 +Y++TA +KG+S+ +V KH LRNA+IP++T++G FG L+ G+ V+E +FN PG+G++L Sbjct: 203 DYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLL 262 Query: 271 VNSVQRRDYTVIQGIILFVAVTYVLVNLIVDLLYAAVDPRIRLK 314 V+SV+ RDY VIQ IL ++ ++L+NL+VD+LYAA++P IR K Sbjct: 263 VDSVEMRDYPVIQAEILLFSLEFILINLVVDVLYAAINPAIRYK 306 >Z1055 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 306 Score = 223 bits (567), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 116/284 (40%), Positives = 173/284 (60%), Gaps = 8/284 (2%) Query: 31 PGDPAAVMLGDGTNPETVAALRTQLGLDLPLLQQYTRWIGQALTGDLGDSFFMKQSVVQA 90 PGDPA ++ G + + + +R QLGLD PL Q+ +I A+ GD G S ++ V Sbjct: 31 PGDPARLIAGPEADAQVIELVRQQLGLDQPLYHQFWHYISNAVQGDFGLSMVSRRPVADE 90 Query: 91 LREHLGPTXXXXXXXXXXXXXXXXPLGIRAAVKRGEAADKMLTGFTLFGITVPGFVLSMF 150 + PT GI AAV R D++ + GI+ P F L M Sbjct: 91 IARRFMPTLWLTITSMVWAVIFGMAAGIIAAVWRNRWPDRLSMTIAVSGISFPAFALGML 150 Query: 151 TVLLFSVQLKWLPVSGYKPLSAGLWTHLKYLLLPALSLGVVQAAVLARVTRSAVLEVLGE 210 + +FSV+L WLP G A W H +LP+L+LG AAV+AR TR++ ++VL E Sbjct: 151 LIQVFSVELGWLPTVG-----ADSWQHY---ILPSLTLGAAVAAVMARFTRASFVDVLSE 202 Query: 211 NYIKTALSKGMSDRMIVYKHVLRNALIPILTVIGGSFGTLIAGAAVIETIFNIPGMGQML 270 +Y++TA +KG+S+ +V KH LRNA+IP++T++G FG L+ G+ V+E +FN PG+G++L Sbjct: 203 DYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLL 262 Query: 271 VNSVQRRDYTVIQGIILFVAVTYVLVNLIVDLLYAAVDPRIRLK 314 V+SV+ RDY VIQ IL ++ ++L+NL+VD+LYAA++P IR K Sbjct: 263 VDSVEMRDYPVIQAEILLFSLEFILINLVVDVLYAAINPAIRYK 306 >ECs0910 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 306 Score = 223 bits (567), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 116/284 (40%), Positives = 173/284 (60%), Gaps = 8/284 (2%) Query: 31 PGDPAAVMLGDGTNPETVAALRTQLGLDLPLLQQYTRWIGQALTGDLGDSFFMKQSVVQA 90 PGDPA ++ G + + + +R QLGLD PL Q+ +I A+ GD G S ++ V Sbjct: 31 PGDPARLIAGPEADAQVIELVRQQLGLDQPLYHQFWHYISNAVQGDFGLSMVSRRPVADE 90 Query: 91 LREHLGPTXXXXXXXXXXXXXXXXPLGIRAAVKRGEAADKMLTGFTLFGITVPGFVLSMF 150 + PT GI AAV R D++ + GI+ P F L M Sbjct: 91 IARRFMPTLWLTITSMVWAVIFGMAAGIIAAVWRNRWPDRLSMTIAVSGISFPAFALGML 150 Query: 151 TVLLFSVQLKWLPVSGYKPLSAGLWTHLKYLLLPALSLGVVQAAVLARVTRSAVLEVLGE 210 + +FSV+L WLP G A W H +LP+L+LG AAV+AR TR++ ++VL E Sbjct: 151 LIQVFSVELGWLPTVG-----ADSWQHY---ILPSLTLGAAVAAVMARFTRASFVDVLSE 202 Query: 211 NYIKTALSKGMSDRMIVYKHVLRNALIPILTVIGGSFGTLIAGAAVIETIFNIPGMGQML 270 +Y++TA +KG+S+ +V KH LRNA+IP++T++G FG L+ G+ V+E +FN PG+G++L Sbjct: 203 DYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLL 262 Query: 271 VNSVQRRDYTVIQGIILFVAVTYVLVNLIVDLLYAAVDPRIRLK 314 V+SV+ RDY VIQ IL ++ ++L+NL+VD+LYAA++P IR K Sbjct: 263 VDSVEMRDYPVIQAEILLFSLEFILINLVVDVLYAAINPAIRYK 306 >BMEII0209 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 315 Score = 222 bits (566), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 118/282 (41%), Positives = 168/282 (59%) Query: 31 PGDPAAVMLGDGTNPETVAALRTQLGLDLPLLQQYTRWIGQALTGDLGDSFFMKQSVVQA 90 PGDPA ++ GDG +PETV +R +LGLD P + Q +W+ DLG SF + Q V QA Sbjct: 32 PGDPAILIAGDGASPETVERIRVELGLDQPTVVQLGQWLWNLFHFDLGRSFLLSQPVSQA 91 Query: 91 LREHLGPTXXXXXXXXXXXXXXXXPLGIRAAVKRGEAADKMLTGFTLFGITVPGFVLSMF 150 + E L T +G+ AA R D + L G++VP F L++ Sbjct: 92 IAERLPVTISLALLAFAITIPVGIIMGVVAAYLRDSWFDTGVMSLALLGVSVPSFWLAIL 151 Query: 151 TVLLFSVQLKWLPVSGYKPLSAGLWTHLKYLLLPALSLGVVQAAVLARVTRSAVLEVLGE 210 V+LFSV L W P +GY P L+ L+LPA L + Q LAR+TRS +LEV+ + Sbjct: 152 AVILFSVTLGWFPSAGYVPFLDSPLGWLRSLILPASILALFQIGYLARMTRSEMLEVMDQ 211 Query: 211 NYIKTALSKGMSDRMIVYKHVLRNALIPILTVIGGSFGTLIAGAAVIETIFNIPGMGQML 270 +YI+TA SKG+S+ ++ H RNAL+ +LTV G F LI G+ VIE IF +PG+G++L Sbjct: 212 DYIRTARSKGVSEYSVLSTHAFRNALVSVLTVSGYIFSLLIGGSVVIEQIFALPGLGRLL 271 Query: 271 VNSVQRRDYTVIQGIILFVAVTYVLVNLIVDLLYAAVDPRIR 312 V ++ RD V+QG +LF+ +V +N++VD+LY DPR+R Sbjct: 272 VQAILARDLPVVQGTMLFLGFLFVAINVLVDILYTIADPRVR 313 >STM0850 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 306 Score = 221 bits (562), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 116/284 (40%), Positives = 173/284 (60%), Gaps = 8/284 (2%) Query: 31 PGDPAAVMLGDGTNPETVAALRTQLGLDLPLLQQYTRWIGQALTGDLGDSFFMKQSVVQA 90 PGDPA ++ G + + +A +R QLGLD PL Q+ +I L GD G S ++ V + Sbjct: 31 PGDPARLIAGPEADAQVIALVRQQLGLDQPLHVQFWHYITHVLQGDFGTSMVSRRPVSEE 90 Query: 91 LREHLGPTXXXXXXXXXXXXXXXXPLGIRAAVKRGEAADKMLTGFTLFGITVPGFVLSMF 150 + PT +GI AAV R D++ + GI+ P F L M Sbjct: 91 IASRFLPTLWLTITSMIWAVLFGMAIGIAAAVWRNRWPDRLGMTLAVTGISFPAFALGML 150 Query: 151 TVLLFSVQLKWLPVSGYKPLSAGLWTHLKYLLLPALSLGVVQAAVLARVTRSAVLEVLGE 210 + +FSV L WLP G A W H +LP+L+LG A+V+AR TRS+ ++VL E Sbjct: 151 LMQIFSVDLGWLPTVG-----ADSWQHY---ILPSLTLGAAVASVMARFTRSSFVDVLSE 202 Query: 211 NYIKTALSKGMSDRMIVYKHVLRNALIPILTVIGGSFGTLIAGAAVIETIFNIPGMGQML 270 +Y++TA +KG+S+ +V KH LRNA+IP++T++G FG L+ G+ V+E +FN PG+G++L Sbjct: 203 DYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLL 262 Query: 271 VNSVQRRDYTVIQGIILFVAVTYVLVNLIVDLLYAAVDPRIRLK 314 V+SV RDY VIQ +L ++ ++L+NL+VD+LYAA++P IR K Sbjct: 263 VDSVDMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIRYK 306 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.325 0.141 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,229,432 Number of extensions: 720670 Number of successful extensions: 2983 Number of sequences better than 1.0e-05: 197 Number of HSP's gapped: 2660 Number of HSP's successfully gapped: 198 Length of query: 314 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 208 Effective length of database: 26,153,027 Effective search space: 5439829616 Effective search space used: 5439829616 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 116 (49.3 bits)