BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0520.0049.p (527 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0210 [E] COG0747 ABC-type dipeptide transport system, perip... 184 4e-46 FN0396 [E] COG0747 ABC-type dipeptide transport system, periplas... 132 1e-30 RSc1380 [E] COG0747 ABC-type dipeptide transport system, peripla... 125 2e-28 PH0807 [E] COG0747 ABC-type dipeptide transport system, periplas... 119 8e-27 PAB0091 [E] COG0747 ABC-type dipeptide transport system, peripla... 115 2e-25 >BMEII0210 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Length = 503 Score = 184 bits (466), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 137/471 (29%), Positives = 237/471 (50%), Gaps = 23/471 (4%) Query: 58 TLDPHLSLN-TNVYIGLNIFEGLFAFDANFQPVPMLAESYELSDDAKTYTFHLRHGVQFH 116 TLDPH+ + + I I+EGL DAN+ MLAESY LS+D KT TF LR GV+FH Sbjct: 31 TLDPHMGNSLVELEIAHQIYEGLVTIDANYNTATMLAESYVLSEDGKTLTFKLRKGVKFH 90 Query: 117 NGKEMKAEDVTASLNRWKSITGRAQASLGESEFTIKDDYTVELKLDHPRNDILAQLSHVL 176 +G +MK++DV AS R+ ++ A+ + DDYT + L L L + Sbjct: 91 DGSDMKSDDVLASFERYAKVSPNAKVLDIVDHYETPDDYTFVIHLKEVNAAFLDTLKSPV 150 Query: 177 NNAAIMPKEIVEAAGPDGVSEYIGTGPFKFVEWKQDQYVHVAKFDDYQSVE-TAASGLSG 235 +I+P E + P + IGTGPFK EWK+D ++++ KF DY + + ASG +G Sbjct: 151 YPFSIIPAE--QKDKPARELDIIGTGPFKLGEWKRDSHLYLEKFADYVADKGKPASGYAG 208 Query: 236 KKEALLQDVYFDIVPDSATRFSSFLAGTYDY-VDVSLDNLPQVEGSPDVKVNKVLG-SDI 293 +K+ + V + + ++ +R ++ G ++ D +++ +P VK +++ Sbjct: 209 EKKVYVDKVRVNFLSETNSRVAAIQTGEAQVTTQLTADATKKLQNAPGVKPLEIIPFCQQ 268 Query: 294 NLVFNKKSPLFSNLKNREAVAAVIDADEILLGTVNSPDLYRLNSSYMYPENKTWYSEAGQ 353 L+ N + +N R+A+ ++A++IL V S + ++ S YP + E + Sbjct: 269 YLIVNTQQAPTNNSAIRKALRTAVNAEDIL---VVSGEAATMDPSMSYPGGAYYSKENAE 325 Query: 354 ENYNQKNPDKAKALLKESGYNGEEVVLLTTKELGGSFYNATIVVQKELESIGVKTKLDIN 413 YNQ NPD+A +L ++GY GEE+VLLT + +++ ++L++ G K ++++ Sbjct: 326 PYYNQNNPDEAAKMLADAGYKGEELVLLTNSNY-DYMRDNIVLLAEQLQAAGFKARVEMT 384 Query: 414 DFAT-LLQKRADPNAWDIYVGLFTM-----PSTPSQLLYLNPSYGFADDAKLAELTVKLT 467 D+AT + W++ F P ++YL P DA + K Sbjct: 385 DWATNSTAMQTGSGKWNVSTTSFCSNPLLGPQQWQSVVYLFPQ--VKSDALMDTAYKKFF 442 Query: 468 SAVSPEEIKAANDALQQYEWEYLAAVKIGDTYSQSATRDKLVGLTTLAGYP 518 +++ E+ +AA ++++ + +KI + S A R +G GYP Sbjct: 443 TSLKLEDRRAAWLDIEKHILDEAYMIKISNRASGRAYRPDDIG-----GYP 488 >FN0396 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Length = 511 Score = 132 bits (332), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 114/375 (30%), Positives = 174/375 (46%), Gaps = 36/375 (9%) Query: 58 TLDPHLSL-NTNVYIGLNIFEGLFAFDANFQPVPMLAESYELSDDAKTYTFHLRHGVQFH 116 +LDPH S N + + + IF+ L D + P PMLAES+E DD KT FHLR GV+FH Sbjct: 50 SLDPHASNDNPSSNVRVQIFDTLMDLDDDGIPQPMLAESWERPDD-KTIIFHLRKGVKFH 108 Query: 117 NGKEMKAEDVTASLNRWKSITGRAQASLGESEFTIKDDYTVELKLDHPRNDILAQLSHVL 176 NG EMKA DV SL R + G + + DDYTV++ + P IL LSH Sbjct: 109 NGDEMKASDVKFSLERALKSPEVSHILAGINGVEVLDDYTVKVTTEKPMAAILNNLSHT- 167 Query: 177 NNAAIMPKEIVEAAGPDGVSEYIGTGPFKFVEWKQDQYVHVAKFDDYQSVETAASGLSGK 236 AI+ ++ AG IGTGP+KFV W+ + + F DY ET Sbjct: 168 -TIAILSEKATTEAGDKFGQNPIGTGPYKFVSWQSGDRITLEAFPDYWRGETP------- 219 Query: 237 KEALLQDVYFDIVPDSATRFSSFLAGTYDYVDVSLDNLPQVEGSPDVKVNKVLGSDINLV 296 ++++ F + + R G D + + L + + D + + G +++ Sbjct: 220 ----VKNIVFRNIVEETNRTIGLETGELD-IAYDIKGLDKNKLKEDERFTLLEGPQVSIT 274 Query: 297 ---FNKKSPLFSNLKNREAVAAVIDA----DEILLGTVNSPDLYRLNSSYMYPENKTWYS 349 FN + + NLK REA++ ID D + LG + S + P +Y Sbjct: 275 YLGFNLRKAPYDNLKVREAISYAIDQKPIIDTVFLGAGEPAN------SIIGPNIWGYYD 328 Query: 350 EAGQENYNQKNPDKAKALLKESGY-NGEEVVLLTTKELGGSFYNATIVVQKELESIGVKT 408 E Y Q + +KAKALL E+GY NG + + + +++Q +L+ IG+ Sbjct: 329 ---VEKYTQ-DIEKAKALLVEAGYPNGFKAKIWVNDN--PVRRDTAVILQDQLKQIGIDL 382 Query: 409 KLDINDFATLLQKRA 423 ++ ++ L A Sbjct: 383 TIETVEWGAFLDGTA 397 >RSc1380 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Length = 517 Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 109/370 (29%), Positives = 178/370 (48%), Gaps = 46/370 (12%) Query: 58 TLDPHLSLNTNVYIGLNIF-EGLFAFDANFQPVPMLAESYELSDDAKTYTFHLRHGVQFH 116 T+DP+ + +T + F +GLF FD + + V +L ESY++S D YTF L GV+FH Sbjct: 43 TMDPYDANDTLSFSAAKSFYQGLFGFDKDMKLVNVLCESYDVSKDGLVYTFRLHKGVKFH 102 Query: 117 NGKEMKAEDVTASLNRWKSITGRAQA-----SLGESEFTIKDDYTVELKLDHPRNDILAQ 171 +G A V A+L+R + + + + ++E + D YT + L P + + Sbjct: 103 DGTTFDANAVKANLDRVTNPANKLKRYTLFNRVAKTE--VVDPYTARVTLKEPFSPFVNV 160 Query: 172 LSHVLNNAAIMPKEIVEAAGPDGVSEYIGTGPFKFVEWKQDQYVHVAKFDDYQSVETAAS 231 L+H +AA++ ++ G D +GTGPF+FVEWKQ Y+ KF Y + Sbjct: 161 LAH--PSAAMISPAALQKYGKDIAFHPVGTGPFEFVEWKQTDYLKGKKFAGYWK-----T 213 Query: 232 GLSGKKEALLQDVYFDIVPDSATRFSSFLAGTYDYV-DVSLDNLPQVEGSPDVKVNKVLG 290 GL + + + V D+ TR + G D+ + + ++GSP KV+ + Sbjct: 214 GLPK-----IDTITWKPVVDNNTRATVMQTGEADFAFSIPFEQAAVLKGSP--KVDLIAA 266 Query: 291 SDI---NLVFNKKSPLFSNLKNREAVAAVIDADEILLGTVNSPDLYRLNSSYMYPENKTW 347 I + FN + F N K R+A+ I+ D + +S Y + + + P+ + Sbjct: 267 PSIIQRYITFNTRVKPFDNPKVRQAINYAINKDALTKVAFSS---YAVPADGVVPQGVDY 323 Query: 348 YSEAGQENYNQKNPDKAKALLKESGY-NGEEVVLLTTKELGGSFYNATIV------VQKE 400 + G Y NP KA+ALLKE+GY +G E L S YN T VQ++ Sbjct: 324 AVKLGPWPY---NPAKARALLKEAGYPDGFETQLW-------SAYNHTTAQKIIQFVQQQ 373 Query: 401 LESIGVKTKL 410 L +G+K ++ Sbjct: 374 LAQVGIKAQV 383 >PH0807 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Length = 597 Score = 119 bits (299), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 114/384 (29%), Positives = 175/384 (45%), Gaps = 59/384 (15%) Query: 71 IGLNIFEGLFAFDANFQPVPMLAESYELSDDAKTYTFHLRHGVQFHNGKEMKAEDVTASL 130 I IF L D ++ +P LA +E+SDD K YTF+L +H+G + AEDV + Sbjct: 65 IANQIFCKLVTLDRDYNVIPDLAYKWEISDDGKVYTFYLNPNATWHDGVPVTAEDVKWTF 124 Query: 131 NRWKSITGRAQASLGE---SEFTIKDDYTVELKLDHPRNDILAQLSHVLNNAAIMPKEIV 187 K G A + + + D+YTV L P L+ L+ I+PK I Sbjct: 125 EAIKKYKGIAYGIIHADNIEKIEVVDNYTVRFYLKEPFAPFLSFLAWY--GTFILPKHIY 182 Query: 188 EAAG----PDG--VSEYIGTGPFKFVEWKQDQYVHVAKFDDYQSVETAASGLSGKKEALL 241 E P +++ IG GPFKFVEW + ++ + ++Y G G + Sbjct: 183 EKYSDWLDPKNPYLNKPIGCGPFKFVEWVKGDHITLVANENY------FRGRPG-----I 231 Query: 242 QDVYFDIVPDSATRFSSFLAGTYDYVDVS--LDNLPQVEGSPDVKVN-KVLGSDINLVFN 298 + + I+PD++ +FLAG D + L +P+++ +P V V+ + + S L FN Sbjct: 232 DKIIYKIIPDASAALQAFLAGEGDVLGQRPPLTEIPRLKSTPGVSVSIRPVPSRWYLGFN 291 Query: 299 KKSPLFSNLKNREAVAAVIDADEILLGTVNSPDLYRLNSSYMYPENKTWYSEAGQENYN- 357 K P +++ R A+A I+ E++ N YP T Y A + YN Sbjct: 292 LKRPYLQDVRVRLAIAYAINRKELVEKAEN---------GLGYPAEGT-YVPAIKWAYNP 341 Query: 358 -----QKNPDKAKALLKESGY---NGE-----------EVVLLTTKELGGSFYNATIVVQ 398 + NP+KAK LL E+G+ NG+ E+ LL GS NA + Sbjct: 342 NAKLPEYNPEKAKQLLDEAGFKDINGDGFRETPDGKPLELRLLY---FTGSDTNAICTLI 398 Query: 399 KE-LESIGVKTKLDINDFATLLQK 421 KE L +G+K KL+ + AT QK Sbjct: 399 KEQLAKVGLKVKLESYEIATWEQK 422 >PAB0091 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Length = 556 Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 109/388 (28%), Positives = 176/388 (45%), Gaps = 52/388 (13%) Query: 58 TLDPHLSLNTNVYIGLNIFEGLFAFDANFQPVPMLAESYELSDDAKTYTFHLRHGVQFHN 117 TLDP S ++ GL +F L N + +P LAES+E+S+D K TFHLR G++ Sbjct: 64 TLDPQKSTWVDITTGL-VFATLINMGTNGKIIPGLAESWEISEDGKVITFHLRKGIRDAL 122 Query: 118 GKEMKAEDVTASLNRWKSITGRAQAS---LGE-SEFTIKDDYTVELKLDHPRNDILAQLS 173 G + AEDV +R + R+ + LG E + DDYTV+L P L L+ Sbjct: 123 GNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKEVKVIDDYTVQLIYKEPYGPALPFLA 182 Query: 174 HVLNNAAIMPKEIVEAAGPDGVSEY-IGTGPFKFVEWKQDQYVHVAKFDDYQSVETAASG 232 + I KE E GP + GTGP+ V+W + Y+ + ++ Sbjct: 183 -TMPPLGIFSKEFYEKVGPVQFGQTPAGTGPYYVVKWVRGAYIEYKRNPYWKREYRPDPA 241 Query: 233 LSGKKEALLQDVYFDIVPDSATRFSSFLAGTYDYVDVSLDNLPQ----VEGSPDVKVNKV 288 L ++ + F I+ + T S F AG + V LD P+ + P+V++ Sbjct: 242 LKNPGPPYIETIRFRIIKEPFTLVSEFKAGN---IHVLLDVPPEFYKDLANDPNVEMIPA 298 Query: 289 LGSDINLV-FNKKSPLFSNLKNREAVAAVIDADEI-------LLGTVNSPDLYRLNSSYM 340 L ++ + FN + F++ + R+A+ I+ +EI L V+ P + +N Sbjct: 299 LEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNG--- 355 Query: 341 YPENKTWYSEAGQENYNQK---NPDKAKALLKESGY------------NGEEVVL---LT 382 YSE +E QK +P+KAK LL E+G+ NG + ++ ++ Sbjct: 356 -------YSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWIS 408 Query: 383 TKELGGSFYNATIVVQKELESIGVKTKL 410 T EL ++Q +L IG+K K+ Sbjct: 409 TGELEAP--KVAQIIQAQLAKIGIKVKI 434 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.314 0.132 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 37,667,871 Number of extensions: 1551782 Number of successful extensions: 2622 Number of sequences better than 1.0e-05: 164 Number of HSP's gapped: 2445 Number of HSP's successfully gapped: 164 Length of query: 527 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 416 Effective length of database: 25,576,357 Effective search space: 10639764512 Effective search space used: 10639764512 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 118 (50.1 bits)