BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0520.0047.p
         (219 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Cgl2842 [S] COG0599 Uncharacterized homolog of gamma-carboxymuco...    49   4e-06
MA3946 [S] COG0599 Uncharacterized homolog of gamma-carboxymucon...    49   8e-06

>Cgl2842 [S] COG0599 Uncharacterized homolog of gamma-carboxymuconolactone
           decarboxylase subunit
          Length = 109

 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 2/102 (1%)

Query: 118 RSNLELAGKLESVNEEIFNSFQAYIHTSLKA--GRISEKDKLLIAVGSAIVEGSAYSIEA 175
            S++E   K+ + + + F +F  +   +L+    +I      +IA+  A     AY I+ 
Sbjct: 6   HSDIEYLKKIGANSPDAFKAFVHFDEAALRGPNKKIPRNYTEMIALAVAFTTQCAYCIDI 65

Query: 176 FTIRAKAAGMTVEELAETTLVATVLKAGSAMAHRVNAYQAFE 217
            T  AK  G+T EELAE  L+A  L+AG AM H   A + ++
Sbjct: 66  HTAAAKKEGVTTEELAEVALIAAALRAGGAMTHGALAMKLYD 107


>MA3946 [S] COG0599 Uncharacterized homolog of gamma-carboxymuconolactone
          decarboxylase subunit
          Length = 124

 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 34/61 (55%)

Query: 23 PEGFKAFGAFNTEALAAGALSVKTKELIAVAVSHITGCPYCIEAHVGKSKAEQTSFEEIF 82
          P+  +AFG         G L  KTKELIA+A S +  C YC++ H  ++ A + S +EI 
Sbjct: 9  PDTAEAFGKLRDSIFEGGELDRKTKELIAIASSVLMRCQYCVDVHSQRAAANEASKKEIA 68

Query: 83 E 83
          E
Sbjct: 69 E 69


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.315    0.128    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 12,808,006
Number of extensions: 400059
Number of successful extensions: 906
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 908
Number of HSP's successfully gapped: 2
Length of query: 219
Length of database: 38,378,431
Length adjustment: 102
Effective length of query: 117
Effective length of database: 26,614,363
Effective search space: 3113880471
Effective search space used: 3113880471
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)