BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0520.0027.p (379 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC2850 [E] COG1125 ABC-type proline/glycine betaine transport s... 351 1e-96 BS_opuBA [E] COG1125 ABC-type proline/glycine betaine transport ... 334 1e-91 BS_opuCA [E] COG1125 ABC-type proline/glycine betaine transport ... 332 6e-91 lin1467 [E] COG1125 ABC-type proline/glycine betaine transport s... 321 1e-87 SA2237 [E] COG1125 ABC-type proline/glycine betaine transport sy... 305 6e-83 >CAC2850 [E] COG1125 ABC-type proline/glycine betaine transport systems, ATPase components Length = 377 Score = 351 bits (900), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 175/377 (46%), Positives = 266/377 (70%), Gaps = 10/377 (2%) Query: 7 VEFRNVSKDYGSGSVLRNFNLTVPKGQIVTIIGPSGCGKTTLLKMINRLVEPSIGNVLVE 66 +E +N+ K + +L N NLT+ KG++VT+IGPSGCGKTT LKMINRL+ + G +L+ Sbjct: 2 IELKNIYKKVNNRIILNNVNLTINKGELVTLIGPSGCGKTTTLKMINRLIRQTSGEILIN 61 Query: 67 GTDIGTLDAVELRRDIGYVIQQIGLFPHMTIEENISIVPKLKGAGKTERKERVDALLSLI 126 G I DA++LRR+IGYVIQQ GLFPH+T+EENIS++ K++ +T+ ++V+ LL+L+ Sbjct: 62 GNKIQNEDAIKLRRNIGYVIQQTGLFPHLTVEENISMILKIEKVDQTKIDKKVEELLNLV 121 Query: 127 GLPPEQYRKRYPHELSGGQQQRIGVARALASDPSIILMDEPFSALDPISRVQLQKELINL 186 G+ PE Y+ +YP +LSGGQQQRIG+ARALA DP IILMDEPFSALDP++R QLQ E+ ++ Sbjct: 122 GMNPEDYKYKYPSQLSGGQQQRIGIARALAMDPEIILMDEPFSALDPLTRNQLQDEIFSI 181 Query: 187 NQRLHKTIVFVTHDIDEALKIADRIILLNEGEVVQNSTPEELLAHPANDFVIEFVGQERF 246 +Q L KTIVFVTHD+DEALK+AD+I ++ +G+V+Q TP+++L +P +DFV FVG+ R Sbjct: 182 HQNLKKTIVFVTHDMDEALKLADKICIMKDGKVIQYDTPDKILKNPKDDFVKTFVGENRI 241 Query: 247 --QPALPQGSAHHIMIDGLSIGSESPIS-EALEVMRINRVEGLAVIGKWGDLLGIVGIGE 303 QP L + IMI+ + S S +ALE+M+ N V+ L V K LLGIV + E Sbjct: 242 WNQPELIK--VKDIMINNVIKSSPERTSIQALEIMKSNHVDRLIVASKDNKLLGIVTLRE 299 Query: 304 IGQHLPLDSRLKVGDLLQTDTVALQEHTPLSEVFELMRRSPI--LPVVDDDNRLIGTVTR 361 + + + +LK D+++ + + E+ + V +++ I +PV+++D+ L+G +T+ Sbjct: 300 LKFSINENKKLK--DIMKNNITTINENDSIVNVLDIVENQKIGFIPVINNDSSLVGLITK 357 Query: 362 SCVIEAL-GRHLHREVS 377 S ++ L + +++EV+ Sbjct: 358 SSLLSVLSNQFINKEVN 374 >BS_opuBA [E] COG1125 ABC-type proline/glycine betaine transport systems, ATPase components Length = 381 Score = 334 bits (857), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 188/376 (50%), Positives = 248/376 (65%), Gaps = 15/376 (3%) Query: 9 FRNVSKDYGSGS-VLRNFNLTVPKGQIVTIIGPSGCGKTTLLKMINRLVEPSIGNVLVEG 67 NVSK Y G + N NL + KG+ + IGPSGCGKTT +KMINRL+EPS G + ++G Sbjct: 4 LENVSKTYKGGKKAVNNVNLKIAKGEFICFIGPSGCGKTTTMKMINRLIEPSAGKIFIDG 63 Query: 68 TDIGTLDAVELRRDIGYVIQQIGLFPHMTIEENISIVPKLKGAGKTERKERVDALLSLIG 127 +I D VELRR IGYVIQQIGLFPHMTI++NIS+VPKL + +RKER LL L+ Sbjct: 64 ENIMDQDPVELRRKIGYVIQQIGLFPHMTIQQNISLVPKLLKWPEQQRKERARELLKLVD 123 Query: 128 LPPEQYRKRYPHELSGGQQQRIGVARALASDPSIILMDEPFSALDPISRVQLQKELINLN 187 + PE Y RYPHELSGGQQQRIGV RALA++P +ILMDEPF ALDPI+R LQ+E L Sbjct: 124 MGPE-YVDRYPHELSGGQQQRIGVLRALAAEPPLILMDEPFGALDPITRDSLQEEFKKLQ 182 Query: 188 QRLHKTIVFVTHDIDEALKIADRIILLNEGEVVQNSTPEELLAHPANDFVIEFVGQERF- 246 + LHKTIVFVTHD+DEA+K+ADRI++L GE+VQ TP+++L +PA++FV EF+G+ER Sbjct: 183 KTLHKTIVFVTHDMDEAIKLADRIVILKAGEIVQVGTPDDILRNPADEFVEEFIGKERLI 242 Query: 247 QPALPQ-GSAHHIM-IDGLSIGSESPISEALEVMRINRVEGLAVIGKWGDLLGIVGIGEI 304 Q + P IM ++I ++ +SEA+++MR RV+ L V+ L G V + I Sbjct: 243 QSSSPDVERVDQIMNTQPVTITADKTLSEAIQLMRQERVDSLLVVNDERVLQGYVDVEII 302 Query: 305 GQHLPLDSRLK---VGDLLQTDTVALQEHTPLSEVFE--LMRRSPILPVVDDDNRLIGTV 359 Q R K V ++L D + T L + L R +PVVD+D RLIG V Sbjct: 303 DQ-----CRKKANLVSEVLHEDIYTVLGGTLLRDTVRKILKRGVKYVPVVDEDRRLIGIV 357 Query: 360 TRSCVIEALGRHLHRE 375 TR+ +++ + L E Sbjct: 358 TRASLVDIVYDSLWGE 373 >BS_opuCA [E] COG1125 ABC-type proline/glycine betaine transport systems, ATPase components Length = 380 Score = 332 bits (851), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 177/365 (48%), Positives = 249/365 (68%), Gaps = 8/365 (2%) Query: 7 VEFRNVSKDYGSGS-VLRNFNLTVPKGQIVTIIGPSGCGKTTLLKMINRLVEPSIGNVLV 65 ++ VSK Y G + + +L + KG+ + IGPSGCGKTT +KMINRL+EPS G + + Sbjct: 2 LKLEQVSKVYKGGKKAVNSIDLDIAKGEFICFIGPSGCGKTTTMKMINRLIEPSSGRIFI 61 Query: 66 EGTDIGTLDAVELRRDIGYVIQQIGLFPHMTIEENISIVPKLKGAGKTERKERVDALLSL 125 +G +I D VELRR IGYVIQQIGLFPHMTI++NIS+VPKL + +RKER LL L Sbjct: 62 DGENIMEQDPVELRRKIGYVIQQIGLFPHMTIQQNISLVPKLLKWPEEKRKERARELLKL 121 Query: 126 IGLPPEQYRKRYPHELSGGQQQRIGVARALASDPSIILMDEPFSALDPISRVQLQKELIN 185 + + PE Y RYPHELSGGQQQRIGV RALA++P +ILMDEPF ALDPI+R LQ+E Sbjct: 122 VDMGPE-YLDRYPHELSGGQQQRIGVLRALAAEPPLILMDEPFGALDPITRDSLQEEFKK 180 Query: 186 LNQRLHKTIVFVTHDIDEALKIADRIILLNEGEVVQNSTPEELLAHPANDFVIEFVGQER 245 L + L+KTIVFVTHD+DEA+K+ADRI++L GE+VQ TP+E+L +PAN+FV EF+G+ER Sbjct: 181 LQRTLNKTIVFVTHDMDEAIKLADRIVILKAGEIVQVGTPDEILRNPANEFVEEFIGKER 240 Query: 246 FQPALPQGSAHHIMIDG--LSIGSESPISEALEVMRINRVEGLAVIGKWGDLLGIVGIGE 303 + P M++ +++ ++ +S+A+++MR RV+ L V+ + L G V + Sbjct: 241 LIQSRPDIERVEQMMNRTPVTVSADKTLSQAIQLMREKRVDSLLVVDRQNVLKGYVDVEM 300 Query: 304 IGQHLPLDSRLKVGDLLQTDTVALQEHTPLSEVFELMRRSPI--LPVVDDDNRLIGTVTR 361 I Q+ S VGD+ ++D +Q+ L + + + I +PVVD+ N L G VTR Sbjct: 301 IDQNRKKAS--IVGDVYRSDIYTVQKGALLRDTVRKILKQGIKYVPVVDEQNHLAGIVTR 358 Query: 362 SCVIE 366 + +++ Sbjct: 359 ASLVD 363 >lin1467 [E] COG1125 ABC-type proline/glycine betaine transport systems, ATPase components Length = 397 Score = 321 bits (822), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 168/365 (46%), Positives = 243/365 (66%), Gaps = 8/365 (2%) Query: 7 VEFRNVSKDYGSGS-VLRNFNLTVPKGQIVTIIGPSGCGKTTLLKMINRLVEPSIGNVLV 65 ++F +V+K Y G + + L + KG+ V IGPSGCGKTT +KMINRL+EP+ G + + Sbjct: 2 LKFEHVTKTYKGGKKAVNDLTLNIDKGEFVCFIGPSGCGKTTTMKMINRLIEPTEGKIFI 61 Query: 66 EGTDIGTLDAVELRRDIGYVIQQIGLFPHMTIEENISIVPKLKGAGKTERKERVDALLSL 125 DI D V+LRR IGYVIQQIGL PHMTI ENI +VPKL + +++ER L+ L Sbjct: 62 NDKDIMAEDPVKLRRSIGYVIQQIGLMPHMTIRENIVLVPKLLKWSEEKKQERAKELIKL 121 Query: 126 IGLPPEQYRKRYPHELSGGQQQRIGVARALASDPSIILMDEPFSALDPISRVQLQKELIN 185 + LP E++ RYP+ELSGGQQQRIGV RALA++ ++ILMDEPF ALDPI+R LQ+E N Sbjct: 122 VDLP-EEFLDRYPYELSGGQQQRIGVLRALAAEQNLILMDEPFGALDPITRDSLQEEFKN 180 Query: 186 LNQRLHKTIVFVTHDIDEALKIADRIILLNEGEVVQNSTPEELLAHPANDFVIEFVGQER 245 L + L KTI+FVTHD+DEA+K+ADRI+++ GE+VQ TP+E+L +PAN FV +F+G++R Sbjct: 181 LQKELGKTIIFVTHDMDEAIKLADRIVIMKAGEIVQFDTPDEILRNPANSFVEDFIGKDR 240 Query: 246 FQPALPQGS--AHHIMIDGLSIGSESPISEALEVMRINRVEGLAVIGKWGDLLGIVGIGE 303 A P + A + + +SI ++ + A+ VM+ RV+ L V+ + L G + + + Sbjct: 241 LIEAKPDVTQVAQIMNTNPVSITADKSLQAAITVMKEKRVDTLLVVDEGNVLKGFIDVEQ 300 Query: 304 IGQHLPLDSRLKVGDLLQTDTVALQEHTPLSEVFE--LMRRSPILPVVDDDNRLIGTVTR 361 I L + V D+++ + + E T L + + L R +PVVD D RL+G VTR Sbjct: 301 I--DLNRRTATSVMDIIEKNVFYVYEDTLLRDTVQRILKRGYKYIPVVDKDKRLVGIVTR 358 Query: 362 SCVIE 366 + +++ Sbjct: 359 ASLVD 363 >SA2237 [E] COG1125 ABC-type proline/glycine betaine transport systems, ATPase components Length = 410 Score = 305 bits (782), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 161/366 (43%), Positives = 242/366 (66%), Gaps = 7/366 (1%) Query: 5 VAVEFRNVSKDY-GSGSVLRNFNLTVPKGQIVTIIGPSGCGKTTLLKMINRLVEPSIGNV 63 + + ++++K Y G+ + + +L + G+ + IG SG GKTT L+MINR++E + G + Sbjct: 2 IMLSIKHLTKIYSGNKKAVDDISLDIQSGEFIAFIGTSGSGKTTALRMINRMIEATEGQI 61 Query: 64 LVEGTDIGTLDAVELRRDIGYVIQQIGLFPHMTIEENISIVPKLKGAGKTERKERVDALL 123 ++G D+ +++ VELRR+IGYVIQQIGL PHMTI+ENI +VPKL K E+ +R L+ Sbjct: 62 EIDGKDVRSMNPVELRRNIGYVIQQIGLMPHMTIKENIVLVPKLLKWTKEEKDKRAKELI 121 Query: 124 SLIGLPPEQYRKRYPHELSGGQQQRIGVARALASDPSIILMDEPFSALDPISRVQLQKEL 183 L+ LP E + +RYP ELSGGQQQRIGV RALA++ IILMDEPF ALDPI+R LQ + Sbjct: 122 KLVDLP-ESFLERYPAELSGGQQQRIGVVRALAAEQDIILMDEPFGALDPITRDTLQDLV 180 Query: 184 INLNQRLHKTIVFVTHDIDEALKIADRIILLNEGEVVQNSTPEELLAHPANDFVIEFVGQ 243 L ++L KT +FVTHD+DEA+K+AD+I +++EG+VVQ TP+ +L HPANDFV +F+GQ Sbjct: 181 KTLQRKLGKTFIFVTHDMDEAIKLADKICIMSEGKVVQFDTPDNILRHPANDFVRDFIGQ 240 Query: 244 ERFQPALPQG-SAHHIMIDGLSIGSESPISEALEVMRINRVEGLAVIGKWGDLLGIVGIG 302 R P + +MI ++I +++ +++A+ +MR RV+ + V+ LLG + I Sbjct: 241 NRLIQDRPNDKTVEGVMIKPITIQADATLNDAVHIMRQKRVDTIFVVDSNNHLLGFLDIE 300 Query: 303 EIGQHLPLDSRLKVGDLLQTDTVALQEHTPLSEVFE--LMRRSPILPVVDDDNRLIGTVT 360 +I Q + L+ D +Q +Q + L + L R +PVVDD RL+G +T Sbjct: 301 DINQGIRGHKSLR--DTMQQHIYTVQIDSKLQDSVRTILKRNVRNVPVVDDKQRLVGLIT 358 Query: 361 RSCVIE 366 R+ V++ Sbjct: 359 RANVVD 364 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.139 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 28,431,167 Number of extensions: 1271432 Number of successful extensions: 12923 Number of sequences better than 1.0e-05: 2220 Number of HSP's gapped: 8832 Number of HSP's successfully gapped: 2497 Length of query: 379 Length of database: 38,378,431 Length adjustment: 108 Effective length of query: 271 Effective length of database: 25,922,359 Effective search space: 7024959289 Effective search space used: 7024959289 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 117 (49.7 bits)