BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0520.0026.p (261 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mlr8761 [K] COG1414 Transcriptional regulator 105 8e-23 DR1156 [K] COG1414 Transcriptional regulator 104 1e-22 Cgl2999 [K] COG1414 Transcriptional regulator 102 7e-22 STM2292 [K] COG1414 Transcriptional regulator 98 1e-20 BH2137 [K] COG1414 Transcriptional regulator 98 2e-20 >mlr8761 [K] COG1414 Transcriptional regulator Length = 269 Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 76/245 (31%), Positives = 133/245 (54%), Gaps = 9/245 (3%) Query: 9 TLSRALDILFALAEESGTLTVSEIAQKVSIPESTTYRFLQTLEQNGIIERRGKN-QIGLG 67 T+ RAL++L L + V+EIA+++ S R L TLE NG +ER + + LG Sbjct: 20 TVQRALNLLKLLGTTEKPIGVNEIARRLGKHVSAVSRTLATLEHNGFVERDEETGRFVLG 79 Query: 68 LRILDLARSLNMQFQRDLLPLALPIMEKLTETVQETSVLFVRTGVNAVCIQNVKSRGLIQ 127 + ++ LA L + D++ +A P +E+L E+ +ET+ L + +A+ +++V G I+ Sbjct: 80 VELIALASRL--LAEHDVVRVARPYLEELAESTRETTSLSLWNKTHAINVEHVLGPGSIK 137 Query: 128 FSIENGRILPLHLGASGKCILA-FENLKVTERIMSSLENDQER-----ARLSVELEHIRA 181 GR P H A+GK +L+ + + E + LE +R + L EL+HIR Sbjct: 138 HIAAPGRRNPAHCTATGKAMLSHMPDSTLREVLALGLERYTDRTTTEVSALESELDHIRK 197 Query: 182 RNYCITKGEVDPDVFAIAAPITDGQGPVIASLSVAGPSFRCNKEHDKAIIARVVSAAEEL 241 + Y + GE P++ A+AA I D +G V A+++V P F ++ ++ + V++AA + Sbjct: 198 QGYALNVGEFIPEIAAVAAVIHDRRGRVAAAIAVTMPVFHFTQQIEQQLAPLVINAAAAI 257 Query: 242 SALMG 246 S +G Sbjct: 258 SKRLG 262 >DR1156 [K] COG1414 Transcriptional regulator Length = 267 Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 79/250 (31%), Positives = 129/250 (51%), Gaps = 13/250 (5%) Query: 8 QTLSRALDILFALAE-ESGTLTVSEIAQKVSIPESTTYRFLQTLEQNGIIERRGKNQI-G 65 +TL R L +L ALAE TLT ++A+K + STTYR L+TL Q G +E ++ + Sbjct: 21 RTLERGLSVLSALAELREATLT--QVAKKAGLSASTTYRLLETLRQQGYVEWEERSGLFS 78 Query: 66 LGLRILDLARSLNMQFQRDLLPLALPIMEKLTETVQETSVLFVRTGVNAVCIQNVKSRGL 125 +GLR + + + + LL A +M+ L E V ET+ L V G AV + V++ L Sbjct: 79 VGLRAYQVGAAFSER--NSLLSAAGAVMQALVEEVNETANLAVLRGNEAVYVHQVEASQL 136 Query: 126 IQFSIENGRILPLHLGASGKCILAFENLKVTERIMS-------SLENDQERARLSVELEH 178 ++ G PLH GK + A+ R + + + A L+ EL Sbjct: 137 MRMFTHIGAAAPLHCSGVGKVLTAWLPPAEVRRKVGDGPFPAYTPHSITTLAALTRELNT 196 Query: 179 IRARNYCITKGEVDPDVFAIAAPITDGQGPVIASLSVAGPSFRCNKEHDKAIIARVVSAA 238 +R ++Y + E + V +A P+ G V+ASLSV+ P+ R K++ ++ RV +A+ Sbjct: 197 VRGQDYALDDEERELGVRCLATPVRAASGEVVASLSVSAPTSRFPKKNIPDMLGRVQAAS 256 Query: 239 EELSALMGNK 248 E++SA +G + Sbjct: 257 EQISARLGWR 266 >Cgl2999 [K] COG1414 Transcriptional regulator Length = 494 Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 116/226 (51%), Gaps = 13/226 (5%) Query: 1 VQKMNGTQTLSRALDILFALAEESGTLTVSEIAQKVSIPESTTYRFLQTLEQNGIIERRG 60 +++ N +++A ++ L E G + +A+ + P S+ YR L TL G +E+ G Sbjct: 221 IKEPNSPSVITKAATLMDVLRTE-GPTNSARLAEVLGEPISSVYRMLHTLTAIGWVEQDG 279 Query: 61 K-NQIGLGLRILDLARSLNMQFQR-DLLPLALPIMEKLTETVQETSVLFVRTGVNAVCIQ 118 K +GL +L LA +Q + DL +A M K+ ET+ L VR G+ AVCI+ Sbjct: 280 KRGSYRVGLAMLTLAE---LQLRHMDLRKIAALTMRKIHALTGETTFLCVRHGIRAVCIE 336 Query: 119 NVKSRGLIQFSIENGRILPLHLGASGKCILAFENLKVTERIMSSL-------ENDQERAR 171 V + ++ G LPLH+GA+ + +LAFE + E ++L R Sbjct: 337 RVDGDRVNSRVLQLGTSLPLHVGAAPRALLAFEGRRAWETYATNLGFEGHNWSKGPSRGE 396 Query: 172 LSVELEHIRARNYCITKGEVDPDVFAIAAPITDGQGPVIASLSVAG 217 L L+ R + +C+ E+ P + A+ API + +G V+ASLS++G Sbjct: 397 LFQHLDEDRDKGFCLVDNEITPGIAAVGAPIYNHRGEVVASLSMSG 442 >STM2292 [K] COG1414 Transcriptional regulator Length = 260 Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 78/256 (30%), Positives = 130/256 (50%), Gaps = 22/256 (8%) Query: 10 LSRALDILFALAEESGTLTVSEIAQKVSIPESTTYRFLQTLEQNGIIERRGKNQIGLGLR 69 L+RA+DIL +A G + + I + + IP+ST Y L L++ I ++ L + Sbjct: 10 LTRAIDILNLIAR-IGPCSAAIIIETLRIPKSTAYLLLNELKRQRFISLDHQDNYCLWTK 68 Query: 70 ILDLARSLNMQFQRDLLPLALPIMEKLTETVQETSVLFVRTGV----NAVCIQNVKSRGL 125 +++L S + + DL LA P +LT+ + ET +L G+ NA I V+S Sbjct: 69 LVEL--SGHALSKMDLRELARP---RLTQLMDETGLL-CHLGIIDHENAYYILKVESSST 122 Query: 126 IQFSIENGRILPLHLGASGKCILAFENLKVTERIMSSLENDQERARLSV---------EL 176 I G+ L L+ GKC+LA++ V + I+ L ERA L+ EL Sbjct: 123 ISVRSHEGKSLSLYRSGIGKCLLAWQPAAVRKAIIEQLV--WERATLTTITEPQQLNDEL 180 Query: 177 EHIRARNYCITKGEVDPDVFAIAAPITDGQGPVIASLSVAGPSFRCNKEHDKAIIARVVS 236 E IR R + GE PDV +AAP+ + + + A++SV G + N+E+ + + ++ Sbjct: 181 ERIRQRGWSFDNGEDYPDVRCVAAPVFNARNELTAAISVVGTRLQINEENLDYLAGKAIA 240 Query: 237 AAEELSALMGNKQGFN 252 A+++S L+G K F+ Sbjct: 241 CAKDISRLLGWKSPFD 256 >BH2137 [K] COG1414 Transcriptional regulator Length = 251 Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/255 (29%), Positives = 128/255 (50%), Gaps = 22/255 (8%) Query: 8 QTLSRALDILFALAEESGTLTVSEIAQKVSIPESTTYRFLQTLEQNGIIERRGKNQ-IGL 66 +++ RAL I+ ++E L V+++A K+S+ +S+ Y+ L TL ++G IE+ + + L Sbjct: 3 KSVDRALTIISLVSEHKQGLGVTDVAAKLSLTKSSAYKLLATLVEHGFIEQDEETKKYRL 62 Query: 67 GLRILDLARSLNMQFQRDLLPLALPIMEKLTETVQETSVLFVRTGVNAVCIQNVKSRGLI 126 G R L+L+ +L D+ A P +E+L T E L + V I ++ + Sbjct: 63 GYRYLELSATLLESI--DIRRQARPFLEQLEATTNEVVHLVLYDQGEMVYIDKLEGTKTL 120 Query: 127 QFSIENGRILPLHLGASGKCILAFENLKV-------------TERIMSSLENDQERARLS 173 + + GR P+H + GK I+A+ KV TER ++ E Sbjct: 121 RTHSKIGRRAPIHCTSVGKVIMAYLPEKVQISLIERYGLPPHTERTITDKET------FM 174 Query: 174 VELEHIRARNYCITKGEVDPDVFAIAAPITDGQGPVIASLSVAGPSFRCNKEHDKAIIAR 233 ELE IR Y E +P + IAAPI D QG + A++S++GPS R +KE + Sbjct: 175 KELEKIRLEGYGYEMEENEPGITCIAAPIFDYQGAITAAVSISGPSIRLSKERLHELRPL 234 Query: 234 VVSAAEELSALMGNK 248 +++ +++S +G + Sbjct: 235 IIAIGKKISQRLGYQ 249 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.134 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,866,724 Number of extensions: 618362 Number of successful extensions: 1795 Number of sequences better than 1.0e-05: 67 Number of HSP's gapped: 1722 Number of HSP's successfully gapped: 67 Length of query: 261 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 157 Effective length of database: 26,383,695 Effective search space: 4142240115 Effective search space used: 4142240115 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 115 (48.9 bits)