BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0520.0023.p
         (263 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DR1583 [R] COG3694 ABC-type uncharacterized transport system, pe...    86   8e-17
DR0204 [R] COG3694 ABC-type uncharacterized transport system, pe...    64   2e-10

>DR1583 [R] COG3694 ABC-type uncharacterized transport system, permease
           component
          Length = 262

 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 125/268 (46%), Gaps = 18/268 (6%)

Query: 5   YLGLLFEYLKNYMKTRLTYRADFWVEVVSDLLFQATNFIFILVIFMH--TESLGGWSQNE 62
           YL LL  ++   +  +L YRA+F   V++ L   AT  + + V+F+   T S+GGWS  E
Sbjct: 4   YLRLLRVFVSATVAAQLEYRANFLGAVLASLGEAATALLGLSVLFLQPGTTSVGGWSFRE 63

Query: 63  VVFVYGFFMVPFGVFSCFV--NMWGFSERYIVKGEMDRILTRPAHNLFQIFLENVD---- 116
            + V GFF++  G  S F+  NM   +E  I  G MD  L +P    F +   N++    
Sbjct: 64  ALLVTGFFLLTEGFISVFIQPNMSRIAEN-IRTGNMDFTLLKPIDAQFNVSARNLNVLRF 122

Query: 117 PPALVGSVIGLIIMGISGSNLGLPFEWWTIPMVIILTLSAVAIYTGIYTTLTSLSFYSDA 176
           P  L+G+  GL++   +    GLP     +     L LS + I   I+  L++ +F+   
Sbjct: 123 PDLLIGA--GLLVYAAA----GLPVTPGGVLAAAGLYLSGLVIVYCIWLALSTTAFWFVK 176

Query: 177 PTGILPLMYNIQNYGRYPVTIYNRAIQVLLTWIIPFAFVGIYPAAMFLHREEMQGMALLT 236
                 L   +    R+P T +   ++  LT+IIP   +   PA     R     +ALL+
Sbjct: 177 TQNATELFNGVFGAARFPATSFPLPVRFFLTFIIPVTLITTVPAQAVTGRLT-PTLALLS 235

Query: 237 PVVG-AIFLGIGLLSWNYGVKRYKGAGS 263
           P++  A+F+   L  W   V  Y  A S
Sbjct: 236 PLIALALFVATRLF-WQKAVASYTSASS 262


>DR0204 [R] COG3694 ABC-type uncharacterized transport system, permease
           component
          Length = 277

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 120/270 (44%), Gaps = 11/270 (4%)

Query: 3   LYYLGLLFEYLKNYMKTRLTYRADFWVEVVSDLLFQATNFIFILVIFMHTESLGGWSQNE 62
           LY+L L F  L+   +++  YR  F ++ ++  L   T F+  +++      LGGW+  E
Sbjct: 10  LYHLRLYFLLLRAQARSQQVYRLSFALDALAAALITFTEFMAFVLVLPRFGGLGGWTLPE 69

Query: 63  VVFVYGFFMVPFGVFSCFVNMWGFS----ERYIVKGEMDRILTRPAHNLFQIFLENVDPP 118
           V  +YG   + F V        GF      + +  G     L RP     Q+F  +    
Sbjct: 70  VSLLYGLAELSFVVMDMLFG--GFDAPNMSQQVRSGSFSTFLLRPLPLPLQVFGSDFALR 127

Query: 119 ALVGSVIGLIIMGISGSNLGLPFEWWTIPMVIILTLSAVAIYTGIYTTLTSLSFYS-DAP 177
            +   ++ + I+  + S L + +    I +++   L   A + G++    +L+F++ ++ 
Sbjct: 128 RVTRVLLAVGIVAYAVSGLDISWTPADIALLVGSVLGMTAFFGGLFVIGGTLTFWTVESV 187

Query: 178 TGILPLMYNIQNYGRYPVTIYNRAIQVLLTWIIPFAFVGIYPAAMFLHREEMQGM----A 233
             +  L Y  ++   YP+ IY   ++   T++IP AF+  +P    L R    G+    A
Sbjct: 188 EAMNVLTYGGRSLISYPMDIYGTFLRKTFTYVIPAAFLSYFPVLHVLGRPLPDGLPEWAA 247

Query: 234 LLTPVVGAIFLGIGLLSWNYGVKRYKGAGS 263
            L    G + L +    W  GV+RY G GS
Sbjct: 248 FLPLPAGVLVLTLAFAFWRVGVRRYVGTGS 277


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.329    0.145    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 20,144,883
Number of extensions: 798216
Number of successful extensions: 2170
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2165
Number of HSP's successfully gapped: 2
Length of query: 263
Length of database: 38,378,431
Length adjustment: 104
Effective length of query: 159
Effective length of database: 26,383,695
Effective search space: 4195007505
Effective search space used: 4195007505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 115 (48.9 bits)