BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0520.0016.p (271 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value DR2316 [V] COG1131 ABC-type multidrug transport system, ATPase c... 220 2e-57 sll0415 [V] COG1131 ABC-type multidrug transport system, ATPase ... 192 7e-49 all4389 [V] COG1131 ABC-type multidrug transport system, ATPase ... 185 8e-47 BH0290 [V] COG1131 ABC-type multidrug transport system, ATPase c... 176 3e-44 MA1596 [V] COG1131 ABC-type multidrug transport system, ATPase c... 174 1e-43 >DR2316 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 327 Score = 220 bits (561), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 110/218 (50%), Positives = 154/218 (70%), Gaps = 2/218 (0%) Query: 6 IEAQLLTKEYSNGRGCRDVSITVEKGEAFGFLGPNGAGKSTIVKMLAGLIRPTSGSA-AL 64 IE + L K Y + +++TV GE FGFLGPNGAGKST VKML GL+ P+ G A L Sbjct: 16 IETRELRKVYRDRAVVDGLTLTVGAGEVFGFLGPNGAGKSTTVKMLLGLVIPSGGEARVL 75 Query: 65 FGHPVGTLAAKAKIGYLPELYRYQEWLTGEEVVRLHARLCGIDKSVADRRIPELLKEVGI 124 G P A +A++G+LPE +R+Q W+T EE + H +L G+ + R+P++L+EVG+ Sbjct: 76 CGSPADP-AVRARLGFLPEQFRFQLWMTAEEFLNFHGQLAGMKSNELRTRVPQVLEEVGL 134 Query: 125 GLRGRDRVKHYSKGMQQRLGLACALVNEPELVFLDEPSSALDPIGRMEVRTILERLKQRG 184 G RG +++ YSKGM QR GLA A++ P+LVFLDEP+SALDPIGR+EVR I+ERLK G Sbjct: 135 GGRGGEQLSGYSKGMLQRCGLAGAILARPQLVFLDEPTSALDPIGRVEVREIIERLKGEG 194 Query: 185 ITIFLNSHLLEDVEVLCDRMALLNNGEILRHGKVTDIL 222 + +FLNSHLL +VE +CDR+A + G +L+ G + +++ Sbjct: 195 VAVFLNSHLLSEVEQVCDRVAFVKAGRVLQQGSMRELM 232 >sll0415 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 354 Score = 192 bits (487), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 96/215 (44%), Positives = 140/215 (65%), Gaps = 2/215 (0%) Query: 22 RDVSITVEKGEAFGFLGPNGAGKSTIVKMLAGLIRPTSGSAALFGHPVGTLAAKAKIGYL 81 + +SI V++GE FG LGPNGAGK+T++K+L G+IR + G L G P+G K ++GYL Sbjct: 71 KPLSIAVQQGETFGLLGPNGAGKTTLLKILLGVIRASGGRGTLLGKPIGDRQTKQRVGYL 130 Query: 82 PELYRYQEWLTGEEVVRLHARLCGIDKSVADRRIPELLKEVGIGLRG--RDRVKHYSKGM 139 PE + ++LT E + L I K RRI + VG+ + + +++ YSKGM Sbjct: 131 PENAYFYDFLTAWEFLDYIGSLFQIGKQERQRRILAMCDLVGLAQKTAKKKQLRQYSKGM 190 Query: 140 QQRLGLACALVNEPELVFLDEPSSALDPIGRMEVRTILERLKQRGITIFLNSHLLEDVEV 199 QR+G+A AL+N+PE+VFLDEP S LDP+GR +VR I+ LK++G TIF NSH+L DVE Sbjct: 191 LQRVGMAQALINDPEVVFLDEPMSGLDPLGRYQVREIILSLKEQGKTIFFNSHILADVEQ 250 Query: 200 LCDRMALLNNGEILRHGKVTDILNKRTSWHFKVGG 234 +CDR+A+L GE+L G + ++L + + G Sbjct: 251 ICDRIAILARGELLCSGSLAEVLGNDEGYEVVLKG 285 >all4389 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 335 Score = 185 bits (469), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 108/231 (46%), Positives = 152/231 (65%), Gaps = 6/231 (2%) Query: 19 RGCRDVSITVEKGEAFGFLGPNGAGKSTIVKMLAGLIRPTSGSAALFGHPVGTLAAKAKI 78 +GC S+TV +GE FG LGPNGAGK+T++K+L G+IRP+ G L G P+G K ++ Sbjct: 44 KGC---SLTVYQGETFGLLGPNGAGKTTLLKLLLGIIRPSGGKGLLLGQPLGDRHIKQRV 100 Query: 79 GYLPELYRYQEWLTGEEVVRLHARLCGIDKSVADRRIPELLKEVGIGLRG--RDRVKHYS 136 GYL E E+LTG E + L A L I SV +RIPELL VG+ + + +++ YS Sbjct: 101 GYLSENPYLYEYLTGWEFLELAAGLFEIPASVQRQRIPELLDLVGLSVADAQKKQMRRYS 160 Query: 137 KGMQQRLGLACALVNEPELVFLDEPSSALDPIGRMEVRTILERLKQRGITIFLNSHLLED 196 KGM QR+G+A AL+N+PEL+FLDEP S LDP+GR +R I+ LK G TIF NSH+L + Sbjct: 161 KGMLQRVGMAQALINDPELIFLDEPMSGLDPLGRYRMREIILSLKAAGKTIFFNSHILSE 220 Query: 197 VEVLCDRMALLNNGEILRHGKVTDILNKRTSWHFK-VGGYSPFLLSWLIEL 246 VE +CDR+A+L+ GE++ G + ++L + ++H + G L WL L Sbjct: 221 VEKICDRIAILSQGELVCSGSLDELLGSQNTYHVQGQNGDWEILKKWLANL 271 >BH0290 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 301 Score = 176 bits (447), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 86/227 (37%), Positives = 139/227 (61%), Gaps = 3/227 (1%) Query: 6 IEAQLLTKEYSNGRGCRDVSITVEKGEAFGFLGPNGAGKSTIVKMLAGLIRPTSGSAALF 65 +E + +TK+Y D S+ + GE G +GPNGAGK+T++KM+ ++ PT G L Sbjct: 3 LEIKSVTKKYKEKTAVHDFSMDLLSGECVGLIGPNGAGKTTLIKMITNILDPTRGDILLN 62 Query: 66 GHPVGTLAAKAKIGYLPELYRYQEWLTGEEVVRLHARLCGIDKSVADRRIPELLKEVGIG 125 G + + K +IGYLP+ + +W+T E + +L GI K + IPE+L +VG+ Sbjct: 63 GKRISEM--KREIGYLPQYPDFYQWMTASETLLFMGQLSGISKKKLTKSIPEILSKVGLR 120 Query: 126 LRGRDRVKHYSKGMQQRLGLACALVNEPELVFLDEPSSALDPIGRMEVRTILERLKQRGI 185 +V +S GM+QRLG+A AL+++P + +DEP SALDPIGR EV I+E +K+ Sbjct: 121 GEENSKVSTFSGGMKQRLGIAQALLHKPSFIVMDEPVSALDPIGRREVLNIIEEIKKDS- 179 Query: 186 TIFLNSHLLEDVEVLCDRMALLNNGEILRHGKVTDILNKRTSWHFKV 232 TI L++H+L D E +C+R+ ++ NGE + + ++LN+ + +V Sbjct: 180 TILLSTHILADAEEICERLVMIKNGEKIEDTTMMELLNRNSKNKIRV 226 >MA1596 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 318 Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 85/211 (40%), Positives = 136/211 (64%), Gaps = 2/211 (0%) Query: 5 AIEAQLLTKEYSNGRGCRDVSITVEKGEAFGFLGPNGAGKSTIVKMLAGLIRPTSGSAAL 64 AIE L K++ + D+S +V +GE FGFLGPNGAGK+T +++L G+ RPTSG+A + Sbjct: 3 AIEVSHLIKKFGSLTALNDISFSVGEGETFGFLGPNGAGKTTTIRILTGVSRPTSGTATI 62 Query: 65 FGHPV--GTLAAKAKIGYLPELYRYQEWLTGEEVVRLHARLCGIDKSVADRRIPELLKEV 122 FGH V T+AA+ +G + E + LT + + A L + + +++ ELL++ Sbjct: 63 FGHDVKHDTIAARQSVGIVSENSNVYDDLTAWQNLMFSAELYHVGRKEREKKANELLRKF 122 Query: 123 GIGLRGRDRVKHYSKGMQQRLGLACALVNEPELVFLDEPSSALDPIGRMEVRTILERLKQ 182 + R D+V+ +SKGM++RL LA +VN P L+FLDEP+S LD + +R ++ L + Sbjct: 123 ELYERRNDKVQGFSKGMKRRLTLAMGMVNSPRLIFLDEPTSGLDVQSNLIIREVISGLVR 182 Query: 183 RGITIFLNSHLLEDVEVLCDRMALLNNGEIL 213 G+T+FL +H +E+ V+CDR+A++N G I+ Sbjct: 183 EGVTVFLTTHNIEEANVMCDRVAIINKGNIV 213 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.322 0.140 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,386,183 Number of extensions: 827786 Number of successful extensions: 10178 Number of sequences better than 1.0e-05: 2027 Number of HSP's gapped: 7762 Number of HSP's successfully gapped: 2214 Length of query: 271 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 166 Effective length of database: 26,268,361 Effective search space: 4360547926 Effective search space used: 4360547926 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 115 (48.9 bits)