BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0520.0008.p (304 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll2385_3 [T] COG0642 Signal transduction histidine kinase 134 2e-31 mll2385_4 [T] COG0784 FOG: CheY-like receiver 130 2e-30 SMb20356_1 [T] COG0642 Signal transduction histidine kinase 105 1e-22 ZbarA_1 [T] COG0642 Signal transduction histidine kinase 104 1e-22 barA_1 [T] COG0642 Signal transduction histidine kinase 104 1e-22 >mll2385_3 [T] COG0642 Signal transduction histidine kinase Length = 354 Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 69/133 (51%), Positives = 92/133 (69%) Query: 1 VTLENNVPDIFFTDEMRLHQILRNLLSNAFKFTEKGFVEVVISRLEPPSAPQLSEPGSVL 60 + ++ +P+ TDE RL QI+ NLLSNAFKFT G V + + +P L Sbjct: 177 INVDPELPETVRTDEKRLQQIVLNLLSNAFKFTSAGEVRLDFRVEKTGRRNGARQPKRAL 236 Query: 61 AFAVRDSGIGIGEMNREVIFEAFRQADGSTARKFGGTGLGLSISLQLARLLGGTISLDSK 120 A AV D+GIGI E +++IFEAF+QADG+T+RK+GGTGLGLSIS ++ARLLGG + ++S Sbjct: 237 AIAVTDTGIGIPEDKQKLIFEAFQQADGTTSRKYGGTGLGLSISREIARLLGGELRVEST 296 Query: 121 EGEGSTFTLFIPC 133 G+GSTFTL IP Sbjct: 297 PGKGSTFTLMIPL 309 >mll2385_4 [T] COG0784 FOG: CheY-like receiver Length = 398 Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 59/115 (51%), Positives = 84/115 (73%) Query: 175 DKEYSNLHGKTVLIVDDDVRNIYALEKGLEPYDMNILTAQSGFECLQMVREQPDVDIVLL 234 + + SNL G VLIVDDD+RNIY+L LE YD+ ++ A+ G E + ++ + PDVD L+ Sbjct: 253 EADKSNLAGAKVLIVDDDIRNIYSLTSVLETYDIEVMHAERGREGIALLEQVPDVDAALI 312 Query: 235 DIMMPNLDGYDTLSIIREELMLPELPIIAISAKTMKEDREKCLAAGASDFISKPV 289 DIMMP +DGY+T+ IR + +P+I+++AK MK DR+KCL AGASD+I+KPV Sbjct: 313 DIMMPEMDGYETMRQIRNTPAIAHIPLISVTAKAMKGDRQKCLDAGASDYIAKPV 367 >SMb20356_1 [T] COG0642 Signal transduction histidine kinase Length = 667 Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 56/131 (42%), Positives = 79/131 (60%), Gaps = 9/131 (6%) Query: 11 FFTDEMRLHQILRNLLSNAFKFTEKGFVEVVISRLEPPSAPQLSEPGSVLAFAVRDSGIG 70 +D+ +L Q L NLLSNA KFT G V + + R + P L F V D+GIG Sbjct: 532 MHSDQTKLRQNLFNLLSNAAKFTNGGRVTLRVRREQRPDR-------DWLVFQVTDTGIG 584 Query: 71 IGEMNREVIFEAFRQADGSTARKFGGTGLGLSISLQLARLLGGTISLDSKEGEGSTFTLF 130 + +E +F AF QAD ST R +GGTGLGLSI+ R++GG ++++S+ G+GS FT+ Sbjct: 585 MSPEQQERLFNAFTQADASTTRNYGGTGLGLSITRSFCRMIGGVVTVESEVGKGSVFTME 644 Query: 131 IP--CREEEEG 139 +P C E +G Sbjct: 645 VPAQCEREADG 655 >ZbarA_1 [T] COG0642 Signal transduction histidine kinase Length = 525 Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 54/131 (41%), Positives = 81/131 (61%), Gaps = 6/131 (4%) Query: 1 VTLENNVPDIFFTDEMRLHQILRNLLSNAFKFTEKGFVEVVISRLEPPSAPQLSEPGSVL 60 + ++++VPD D +RL QI+ NL+ NA KFTE G +++++ + LS + Sbjct: 392 LNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEK------RALSNTKVQI 445 Query: 61 AFAVRDSGIGIGEMNREVIFEAFRQADGSTARKFGGTGLGLSISLQLARLLGGTISLDSK 120 +RD+GIGI E ++ +F+AFRQAD S +R+ GGTGLGL I+ +L +GG IS S+ Sbjct: 446 EVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQ 505 Query: 121 EGEGSTFTLFI 131 GSTF I Sbjct: 506 PNRGSTFWFHI 516 >barA_1 [T] COG0642 Signal transduction histidine kinase Length = 525 Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 54/131 (41%), Positives = 81/131 (61%), Gaps = 6/131 (4%) Query: 1 VTLENNVPDIFFTDEMRLHQILRNLLSNAFKFTEKGFVEVVISRLEPPSAPQLSEPGSVL 60 + ++++VPD D +RL QI+ NL+ NA KFTE G +++++ + LS + Sbjct: 392 LNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEK------RALSNTKVQI 445 Query: 61 AFAVRDSGIGIGEMNREVIFEAFRQADGSTARKFGGTGLGLSISLQLARLLGGTISLDSK 120 +RD+GIGI E ++ +F+AFRQAD S +R+ GGTGLGL I+ +L +GG IS S+ Sbjct: 446 EVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQ 505 Query: 121 EGEGSTFTLFI 131 GSTF I Sbjct: 506 PNRGSTFWFHI 516 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.138 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 22,417,109 Number of extensions: 906666 Number of successful extensions: 3444 Number of sequences better than 1.0e-05: 435 Number of HSP's gapped: 3358 Number of HSP's successfully gapped: 435 Length of query: 304 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 198 Effective length of database: 26,153,027 Effective search space: 5178299346 Effective search space used: 5178299346 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 115 (48.9 bits)