BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0518.0001.p
         (182 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH1590 [H] COG2087 Adenosyl cobinamide kinase/adenosyl cobinamid...    71   9e-13

>BH1590 [H] COG2087 Adenosyl cobinamide kinase/adenosyl cobinamide
           phosphate guanylyltransferase
          Length = 188

 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 10/183 (5%)

Query: 1   MSILVTGGARSGKSGFAE-QLVFSLADQA----VYVATGQAFDEEMKARIALHRKLREES 55
           M + ++G  RSGKS +AE + + S++ Q+     YVAT    D EM +RI  H++ RE++
Sbjct: 1   MFVFISGAVRSGKSSYAEARAIESISKQSGGQLYYVATSTVADHEMASRIKHHQQQREQA 60

Query: 56  GGAWXXXXXXXXXXXXXDRLSGGKAVLVDCLTLWLSNVLLAVEDQEDRQXXXXXXXXXXX 115
           G  W                     VL+DCLT  L+N L    D ++             
Sbjct: 61  GVPWNVIEAQVDIGSLAANFDERDIVLIDCLTTLLNNELFRTLDAKEYSLAKEKERTVAK 120

Query: 116 XXXA-----SFRGTLVLVTNEVGDGIVPEYPLGRLYRDLAGRMNALLARQCGQVFLVTAG 170
                        T +LV+NEVGD +  E      Y+     ++  L R+  +  LV  G
Sbjct: 121 LSQELDLFLHGNWTTLLVSNEVGDDMPYEDEYTLAYQHALSLLHQKLVREGDEAVLVEHG 180

Query: 171 IPV 173
           IP+
Sbjct: 181 IPL 183


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.321    0.137    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 10,979,939
Number of extensions: 367018
Number of successful extensions: 531
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 528
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 38,378,431
Length adjustment: 100
Effective length of query: 82
Effective length of database: 26,845,031
Effective search space: 2201292542
Effective search space used: 2201292542
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)