BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0517.0004.p (289 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1065 [G] COG4209 ABC-type polysaccharide transport system, per... 261 1e-69 BS_lplB [G] COG4209 ABC-type polysaccharide transport system, pe... 241 1e-63 BH0484 [G] COG4209 ABC-type polysaccharide transport system, per... 231 1e-60 BH1911 [G] COG4209 ABC-type polysaccharide transport system, per... 228 8e-60 BH2112 [G] COG4209 ABC-type polysaccharide transport system, per... 211 1e-54 >BH1065 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 317 Score = 261 bits (666), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 121/261 (46%), Positives = 190/261 (72%) Query: 12 IVFKYGPLYGVVIAFKDFKVVDGIWGSPWVGFQHFQELFQSSDFYRLLKNTLLLNFYQLV 71 ++F+YGP++G+V+AF+D+K G GS WVG QHF +F+ +++ NTL+++ +++ Sbjct: 42 LIFQYGPMFGIVMAFQDYKPWLGFTGSEWVGLQHFITMFEYDYAKQVIWNTLVISVLKMI 101 Query: 72 FAFPAPIILAILLNEVRSRYFQRFIQTTMYLPHFVSWVIMSGLLIYFLSPTTGIMADIMG 131 F PII+A+LLNE+ +R +QT +YLP+F+SWVI+ G+LI LSP GI+ +G Sbjct: 102 FGLIVPIIVALLLNEMYQMVVKRTVQTIIYLPYFLSWVILGGILIDVLSPDGGIVNQALG 161 Query: 132 WFGKEPIFFMGKKEYFRSIVVGSSILKDLGWGSIIYFAALSGINPEIQESAIIDGANRWQ 191 FG +PIFF+G ++FR+ VV S + K+ G+ +I++ AA++ +NP + E+A++DGANRW+ Sbjct: 162 LFGIDPIFFLGSNDWFRTTVVISDLWKETGFNTIVFLAAITAVNPNLYEAAVVDGANRWK 221 Query: 192 RIIRINVPSIMPTISIMFILSLGGFLSANFEQIINLLNPVTFETGDVIDTYVYRVGLQQF 251 + + I +P+++P I ++ LSLG L+A F+QI NL NP+ ++TGD+IDTYVYRV L Sbjct: 222 QTLHITLPAMLPIIIVVATLSLGNILNAGFDQIFNLYNPLVYQTGDIIDTYVYRVSLVNG 281 Query: 252 QYSYTAAIGLFKSLVGLVLIL 272 +SY A+GLFKSL+ LVLI+ Sbjct: 282 DFSYGTAVGLFKSLISLVLII 302 >BS_lplB [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 318 Score = 241 bits (614), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 125/272 (45%), Positives = 187/272 (68%) Query: 12 IVFKYGPLYGVVIAFKDFKVVDGIWGSPWVGFQHFQELFQSSDFYRLLKNTLLLNFYQLV 71 ++FKY P++GV+IAFKD+ G W S WVGF +F++ F + DF+RLL+NTL+L L+ Sbjct: 43 LIFKYLPMWGVLIAFKDYSPYLGFWKSEWVGFDYFKDFFMNPDFFRLLRNTLMLASLDLL 102 Query: 72 FAFPAPIILAILLNEVRSRYFQRFIQTTMYLPHFVSWVIMSGLLIYFLSPTTGIMADIMG 131 FAFPAP+ILA+LLNEVR ++R IQT +Y+PHFVSW I+ + F + TG++ ++ Sbjct: 103 FAFPAPLILALLLNEVRKAVYKRCIQTFIYVPHFVSWTIVVSITFVFFTVDTGVINKLIM 162 Query: 132 WFGKEPIFFMGKKEYFRSIVVGSSILKDLGWGSIIYFAALSGINPEIQESAIIDGANRWQ 191 E I F+ ++FR ++V SI K+ GWG+I++ AAL+ ++ E E+AI+DGA R++ Sbjct: 163 SLTGEQISFLSDADWFRPMIVMQSIWKETGWGTILFLAALATVDQEQYEAAIMDGAGRFR 222 Query: 192 RIIRINVPSIMPTISIMFILSLGGFLSANFEQIINLLNPVTFETGDVIDTYVYRVGLQQF 251 R+ I +P+I TI ++ IL +G FL+ FEQ+ + N + D+ DTYVY +G+ Q Sbjct: 223 RMWHITLPAIRSTIIVLLILRIGSFLNLGFEQVYLMTNSLNRSVADIFDTYVYMMGITQG 282 Query: 252 QYSYTAAIGLFKSLVGLVLILGANLTVKKLSK 283 YSY+ A+GLFKS+VG++LI GAN KK + Sbjct: 283 AYSYSTAVGLFKSVVGIILIFGANYIAKKFDQ 314 >BH0484 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 325 Score = 231 bits (588), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 118/278 (42%), Positives = 190/278 (68%), Gaps = 2/278 (0%) Query: 12 IVFKYGPLYGVVIAFKDFKVVDGIWGSPWVGFQHFQELFQSSDFYRLLKNTLLLNFYQLV 71 ++FKY P++G++IAF+D++ G+ GS WVGF+HF+ LF F++LL+NTL+L Y L+ Sbjct: 50 LIFKYVPMWGLIIAFQDYQPFLGVTGSEWVGFKHFERLFTEPTFFQLLRNTLVLFLYNLI 109 Query: 72 FAFPAPIILAILLNEVRSRYFQRFIQTTMYLPHFVSWVIMSGLLIYFLSPTTGIMADIMG 131 F FP PIILA+LLNE+R F+RF+QT +Y+PHF+SWVI+ L + G++ +I+ Sbjct: 110 FFFPVPIILAVLLNEIRLMVFKRFVQTMIYIPHFMSWVIVVSLTYVLFTTDGGVINEIIY 169 Query: 132 WFGKEPIFFMGKKEYFRSIVVGSSILKDLGWGSIIYFAALSGINPEIQESAIIDGANRWQ 191 + + F+ +++FR + + I ++ GW +IIYFAA++ I+P + E+A +DGANR++ Sbjct: 170 SITGKNVNFLMSEDWFRPLYILQVIWREAGWATIIYFAAIAAIDPSLYEAAKMDGANRFR 229 Query: 192 RIIRINVPSIMPTISIMFILSLGGFLSANFEQIINLLNPVTFETGDVIDTYVYRVGLQQF 251 +I I +P+I I ++ IL +G L FE + +LN + E ++ DTYVY GL++ Sbjct: 230 QIWHITLPAIRSVIVVLLILKIGDILELGFEHVFLMLNAMNREVAEIFDTYVYTAGLKEG 289 Query: 252 QYSYTAAIGLFKSLVGLVLILGANLTVKKLSKGENGLW 289 Q+SY+ A+G FKS+VGL++++ AN KK GE G++ Sbjct: 290 QFSYSTAVGFFKSIVGLIMVMLANWLAKKF--GEEGVY 325 >BH1911 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 319 Score = 228 bits (581), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 117/274 (42%), Positives = 178/274 (64%), Gaps = 2/274 (0%) Query: 12 IVFKYGPLYGVVIAFKDFKVVDGIWGSPWVGFQHFQELFQSSDFYRLLKNTLLLNFYQLV 71 +VF Y PL+G +AF++F+ + WVG QHF ELFQ + FY +L+NTL ++ L+ Sbjct: 42 LVFNYFPLWGWTMAFQNFRPGLSFFEQEWVGLQHFIELFQDNRFYLVLRNTLAMSIMGLI 101 Query: 72 FAFPAPIILAILLNEVRSRYFQRFIQTTMYLPHFVSWVIMSGLLIYFLSPTTGIMADIMG 131 F PI+ A+LLNEVR F+R +QT YLPHFVSWV+++G++ LS GI+ ++ Sbjct: 102 VGFTMPILFAVLLNEVRHMVFKRTVQTVSYLPHFVSWVVVAGIVTKMLSIDGGIVNQLLM 161 Query: 132 WFG--KEPIFFMGKKEYFRSIVVGSSILKDLGWGSIIYFAALSGINPEIQESAIIDGANR 189 FG +P+ FM K E+F IV S + K++GW SII+ AA++GI+P++ E+A +DGA+R Sbjct: 162 AFGFVDQPVQFMAKGEWFWVIVTLSDLWKEMGWNSIIFLAAMAGIDPQLYEAAKVDGASR 221 Query: 190 WQRIIRINVPSIMPTISIMFILSLGGFLSANFEQIINLLNPVTFETGDVIDTYVYRVGLQ 249 W++I I +P I PTI ++ ILS+G ++ FE+ L NP+ + +V+D Y GL Sbjct: 222 WRQIWHITLPGIRPTILVILILSIGHLMAIGFEKQFLLGNPLVVDYSEVLDLYALNYGLG 281 Query: 250 QFQYSYTAAIGLFKSLVGLVLILGANLTVKKLSK 283 +YSY AIG+F S+V ++L+ AN K+ + Sbjct: 282 LGRYSYGTAIGIFNSVVCIILLFLANGIFKRFTN 315 >BH2112 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 337 Score = 211 bits (537), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 112/276 (40%), Positives = 167/276 (60%), Gaps = 2/276 (0%) Query: 12 IVFKYGPLYGVVIAFKDFKVVDGIWGSPWVGFQHFQELFQSSDFYRLLKNTLLLNFYQLV 71 I+F+Y PLYG IAF+DF+ I+ W GF+HF LF F+ +L+NTL ++ LV Sbjct: 60 IIFRYVPLYGWSIAFQDFRPARPIFDQDWAGFKHFTFLFTDPRFFEVLRNTLAMSLINLV 119 Query: 72 FAFPAPIILAILLNEVRSRYFQRFIQTTMYLPHFVSWVIMSGLLIYFLSPTTGIMADIMG 131 F I LAILLNE+R+ F+R +QT Y+PHF+SWV+ +GL+ LS GI+ ++ Sbjct: 120 LGFVTAIGLAILLNELRNLTFKRVVQTISYMPHFLSWVVAAGLVSAALSIENGIINIVLM 179 Query: 132 WFG--KEPIFFMGKKEYFRSIVVGSSILKDLGWGSIIYFAALSGINPEIQESAIIDGANR 189 G EPI ++G EYF I+ S + K++GW +IIY AA++ I+ E E+A IDGA R Sbjct: 180 KLGMISEPIMWLGVGEYFWGIIGASDVWKNVGWNTIIYLAAITMIDTEQYEAAEIDGATR 239 Query: 190 WQRIIRINVPSIMPTISIMFILSLGGFLSANFEQIINLLNPVTFETGDVIDTYVYRVGLQ 249 QRI I +P + P I I+ I++LG L + FE L+NP+ + + +D +V R G+ Sbjct: 240 LQRIWYITLPGMRPVIVILLIMNLGYILESGFEAQYLLMNPMNMDFAENLDIFVLRYGIN 299 Query: 250 QFQYSYTAAIGLFKSLVGLVLILGANLTVKKLSKGE 285 +S A G+FK++V + + AN K+L + Sbjct: 300 MGNFSLATAAGIFKTVVSFIFLFSANHIAKRLGEAR 335 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.329 0.145 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,426,128 Number of extensions: 825242 Number of successful extensions: 2471 Number of sequences better than 1.0e-05: 113 Number of HSP's gapped: 2418 Number of HSP's successfully gapped: 113 Length of query: 289 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 184 Effective length of database: 26,268,361 Effective search space: 4833378424 Effective search space used: 4833378424 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 115 (48.9 bits)