BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0517.0003.p (289 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_ytcP [G] COG0395 ABC-type sugar transport system, permease co... 213 3e-55 BH0481 [G] COG0395 ABC-type sugar transport system, permease com... 210 2e-54 BH1066 [G] COG0395 ABC-type sugar transport system, permease com... 187 2e-47 BS_lplC [G] COG0395 ABC-type sugar transport system, permease co... 185 6e-47 SP1797 [G] COG0395 ABC-type sugar transport system, permease com... 177 2e-44 >BS_ytcP [G] COG0395 ABC-type sugar transport system, permease component Length = 286 Score = 213 bits (542), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 114/291 (39%), Positives = 176/291 (60%), Gaps = 7/291 (2%) Query: 1 MKTRKWQDLITPAIIYLVLSLLALIVVYPFIHVTAVSFSGRGEALRSGFHFFPRDFEWRA 60 MK R + LI Y L + ALI V PFIHV A SF+ E + F P F A Sbjct: 1 MKNRLFDMLI-----YGFLLMFALICVLPFIHVIAASFATVEEVVSKKFILIPTTFSLDA 55 Query: 61 YRELLEYPFIWSGYANTVFRMXXXXXXXXXXXXCAAYPLSRPDFPMKRVLIMLILFTMIF 120 YR + I+ +VF AY LSR D ++ L+ L++FTM+F Sbjct: 56 YRYIFSTDIIYKSLLVSVFVTVIGTAVSMFLSSLMAYGLSRRDLIGRQPLMFLVVFTMLF 115 Query: 121 EGGIVPNYLLIKELHLLNSRWVYVLPTAANAFQVLVMLSFFRSIPDALIEAARIDGARDM 180 GG++P +L++K L LL+S W +LPTA NAF ++++ +FF++IP +L E+A+IDG D+ Sbjct: 116 SGGMIPTFLVVKSLGLLDSYWALILPTAINAFNLIILKNFFQNIPSSLEESAKIDGCNDL 175 Query: 181 RILFRIVLPLSIPSLVTIGLWSLVHHINAFMDNLLYVTDQSKYVLQQVVRQILI--ENKL 238 I F+IVLPLS+P++ TI L+ V + N +M +LY+ D +K+ +Q ++RQI+I Sbjct: 176 GIFFKIVLPLSLPAIATISLFYAVTYWNTYMTAILYLNDSAKWPIQVLLRQIVIVSSGMQ 235 Query: 239 DPFTTATNLTPPAPESLKMASVIVCSLPVLVLYPFLLKYFEKGTMIGSVKG 289 + + +PP +++KMA ++V ++PVL++YPF+ K+F KG ++GSVKG Sbjct: 236 GDMSEMGSGSPPPEQTIKMAVIVVATIPVLLVYPFIQKHFAKGALLGSVKG 286 >BH0481 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 210 bits (535), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 106/277 (38%), Positives = 170/277 (61%), Gaps = 3/277 (1%) Query: 16 YLVLSLLALIVVYPFIHVTAVSFSGRGEALRSGFHFFPRDFEWRAYRELLEYPFIWSGYA 75 YL L L ++I PF+H+ A SF+ E L+ F FP F AYR + I+ Sbjct: 17 YLFLFLFSMICFLPFVHIVAGSFASVEEVLQKRFILFPTTFSLDAYRYIFSTDIIFRSLI 76 Query: 76 NTVFRMXXXXXXXXXXXXCAAYPLSRPDFPMKRVLIMLILFTMIFEGGIVPNYLLIKELH 135 ++ AY LSR D +RVL+ L++FTM+F GG++P +L+++ L Sbjct: 77 ISILVTVVGTGFSMFLTSLMAYGLSRKDLDGRRVLMFLVVFTMLFSGGMIPTFLVVRSLG 136 Query: 136 LLNSRWVYVLPTAANAFQVLVMLSFFRSIPDALIEAARIDGARDMRILFRIVLPLSIPSL 195 LL++ W ++PTA NAF ++++ +FF++IP++L E+A+IDG D+ I FRIV PLS+P++ Sbjct: 137 LLDTYWALIIPTAINAFNLIILKNFFQNIPESLEESAKIDGCNDVGIFFRIVFPLSMPAI 196 Query: 196 VTIGLWSLVHHINAFMDNLLYVTDQSKYVLQQVVRQILIEN---KLDPFTTATNLTPPAP 252 TI L+ V + N FM +LY+ D S + +Q ++RQI+I + + D P Sbjct: 197 ATISLFYAVTYWNTFMQAILYLNDSSMWPIQVLLRQIVIMSSGMQGDLTELGAGFVMPPE 256 Query: 253 ESLKMASVIVCSLPVLVLYPFLLKYFEKGTMIGSVKG 289 +++KMA ++V ++PVL++YPF+ K+F KG ++GSVKG Sbjct: 257 QTIKMAVIVVATIPVLIVYPFIQKHFAKGALLGSVKG 293 >BH1066 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 99/290 (34%), Positives = 165/290 (56%), Gaps = 5/290 (1%) Query: 2 KTRKWQDLITPAIIYLVLSLLALIVVYPFIHVTAVSFSGRGEALRSGFHFFPRDFEWRAY 61 KT+ ++ + A Y L L A++ + P +H+ AVS SG G A + F P DF AY Sbjct: 5 KTKGYK--VFTAFNYTFLLLFAVLCILPLVHIFAVSLSGSGAAAANLVMFLPVDFTLDAY 62 Query: 62 RELLEYPFIWSGYANTVFRMXXXXXXXXXXXXCAAYPLSRPD--FPMKRVLIMLILFTMI 119 + + +V R+ CAAY LS+ D F ++ I + TM+ Sbjct: 63 ERTIANDNFIRSFLISVVRVVLGTVISMGAMLCAAYALSKEDRDFKGRKFYIWFFVITML 122 Query: 120 FEGGIVPNYLLIKELHLLNSRWVYVLPTAANAFQVLVMLSFFRS-IPDALIEAARIDGAR 178 F GG+VP Y+++ L L N+ W VLP A NAF ++++L+FFR+ +P +L E+A IDGA Sbjct: 123 FNGGLVPTYMVVTGLGLTNTIWALVLPPAINAFNLILLLNFFRTAVPKSLEESAFIDGAN 182 Query: 179 DMRILFRIVLPLSIPSLVTIGLWSLVHHINAFMDNLLYVTDQSKYVLQQVVRQILIENKL 238 +I +I LP+S+P++ T+ L+++V H N++ D ++Y D Y LQ ++ I+++ Sbjct: 183 HFQIFLKIYLPISVPAIATVSLFTMVFHWNSWFDGMIYNNDARNYPLQTFLQTIVVQQDF 242 Query: 239 DPFTTATNLTPPAPESLKMASVIVCSLPVLVLYPFLLKYFEKGTMIGSVK 288 T A L + +++ A + + +LP+L++YPF+ KYF KG ++G+ K Sbjct: 243 SQITDAETLRNLSQRTVQAAQIFIAALPMLIVYPFIQKYFVKGIVLGAEK 292 >BS_lplC [G] COG0395 ABC-type sugar transport system, permease component Length = 295 Score = 185 bits (470), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 97/275 (35%), Positives = 157/275 (57%), Gaps = 3/275 (1%) Query: 17 LVLSLLALIVVYPFIHVTAVSFSGRGEALRSGFHFFPRDFEWRAYRELLEYPFIWSGYAN 76 L L + I + PF+++ A SF+ E + F FP+ F AY+ + P Sbjct: 22 LFLGGVGAITILPFLYIIAGSFATEAELAQRSFFIFPKTFTLDAYKYVFSTPTFLRSMGV 81 Query: 77 TVFRMXXXXXXXXXXXXCAAYPLSRPDFPMKRVLIMLILFTMIFEGGIVPNYLLIKELHL 136 ++F AYPL++ + +L+ L++F+M+F GG++P YL++K L L Sbjct: 82 SIFITVVGTAVQLFFTFTMAYPLAKRHVKGRNLLLNLVIFSMLFSGGMIPTYLVVKSLGL 141 Query: 137 LNSRWVYVLPTAANAFQVLVMLSFFRSIPDALIEAARIDGARDMRILFRIVLPLSIPSLV 196 L++ W +LP A N F ++++ +FF+ +P L E+A+IDG ++ + +RI LPLS P + Sbjct: 142 LDTYWALILPMAINPFNLIIIKNFFQQLPRELEESAKIDGCSEIGVFWRIALPLSKPVIA 201 Query: 197 TIGLWSLVHHINAFMDNLLYVTDQSKYVLQQVVRQILIENKLDPFT--TATNLTPPAPES 254 T L+ V N F LLY+ D +K+ LQ V+RQ+ I + L T N PP + Sbjct: 202 TFALFYAVGIWNDFFHALLYINDSAKWPLQMVLRQVTILSDLTATNGDTMQNAVPPE-QG 260 Query: 255 LKMASVIVCSLPVLVLYPFLLKYFEKGTMIGSVKG 289 +K+A +++ +LP+L +YPFL K+F KG +IGSVKG Sbjct: 261 IKLAVIVIATLPILAVYPFLQKHFAKGMLIGSVKG 295 >SP1797 [G] COG0395 ABC-type sugar transport system, permease component Length = 305 Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 91/277 (32%), Positives = 159/277 (57%), Gaps = 4/277 (1%) Query: 17 LVLSLLALIVVYPFIHVTAVSFSGRGEALRSGFHFFPRDFEWRAYRELLEYPFIWSGYAN 76 +++ + L+ + P +++ SF + G F P D+ Y+ + I G+ N Sbjct: 29 IIIVFIVLMTLLPLLYIVVASFMDPKVLVSRGISFNPADWTVEGYQRVFSDQSILRGFIN 88 Query: 77 TVFRMXXXXXXXXXXXXCAAYPLSRPDFPMKRVLIMLILFTMIFEGGIVPNYLLIKELHL 136 ++ AYPLS+ D +R + ++ TM F GG+VP YLL+KEL + Sbjct: 89 SLLYSFGFAALTVLLSVFTAYPLSKKDLVGRRWINYFLIVTMFFGGGLVPTYLLVKELGM 148 Query: 137 LNSRWVYVLPTAANAFQVLVMLSFFRSIPDALIEAARIDGARDMRILFRIVLPLSIPSLV 196 LN+ W ++P A N + +++ ++F+ +P+ L+EAA IDGA D++I F+I+LPL+ P + Sbjct: 149 LNTPWAIIVPGAVNVWNIILARAYFQGLPEELVEAAVIDGANDLQIFFKIMLPLAKPIMF 208 Query: 197 TIGLWSLVHHINAFMDNLLYVTDQSKYVLQQVVRQILIENK----LDPFTTATNLTPPAP 252 + L++ V N++ D ++Y+ D + LQ V+R+ILI+++ + A N Sbjct: 209 VLFLYAFVGQWNSYFDAMIYIKDPNLEPLQLVLRKILIQSQPGQDMIGAQAAMNEMKRLA 268 Query: 253 ESLKMASVIVCSLPVLVLYPFLLKYFEKGTMIGSVKG 289 E +K A++++ SLP++V+YPF KYF+KG M GS+KG Sbjct: 269 ELIKYATIVISSLPLIVMYPFFQKYFDKGIMAGSLKG 305 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.330 0.144 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,639,028 Number of extensions: 714182 Number of successful extensions: 2569 Number of sequences better than 1.0e-05: 133 Number of HSP's gapped: 2388 Number of HSP's successfully gapped: 133 Length of query: 289 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 184 Effective length of database: 26,268,361 Effective search space: 4833378424 Effective search space used: 4833378424 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)