BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0515.0039.p (214 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Cj1434c [M] COG0463 Glycosyltransferases involved in cell wall b... 143 2e-34 ZyibD [M] COG0463 Glycosyltransferases involved in cell wall bio... 74 2e-13 ECs4493 [M] COG0463 Glycosyltransferases involved in cell wall b... 74 2e-13 ZyibD [M] COG0463 Glycosyltransferases involved in cell wall bio... 72 6e-13 yibD [M] COG0463 Glycosyltransferases involved in cell wall biog... 72 6e-13 >Cj1434c [M] COG0463 Glycosyltransferases involved in cell wall biogenesis Length = 445 Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 84/207 (40%), Positives = 118/207 (57%), Gaps = 26/207 (12%) Query: 1 MPSLNIATYIKECMDSVVAQTLQDIEIICVDAGSTDGTREILQEYATXXXXXXXXXXXXK 60 +PSLN +YI+EC+DS++ QTL+DIEI+C+DA STDGT E+L+ Y K Sbjct: 13 VPSLNSISYIRECIDSILNQTLKDIEILCIDANSTDGTLEVLKNYEKKDKRLRVIISDKK 72 Query: 61 SYGYQVNWGFDVAKGKYLGIVETDDYIEPEMFQTLYDVAIXXXXXADFVKSDFFFFADVP 120 SYGYQ+N G AKG+YLGIVE+DDYI+ M++ LY++A + VK DF+ FA Sbjct: 73 SYGYQMNLGIKEAKGEYLGIVESDDYIKTNMYERLYEIA--KKNDCEVVKGDFYIFA--- 127 Query: 121 KGRQTLEYKLFGSSS-TSVKRVSHTDYTNRLV----PIDTFMWN------GIYKRQFIQK 169 +G + +V R S D N V I F+ + GIY+ ++ Sbjct: 128 ----------YGKTEYVNVLRNSCEDIYNYKVNWNKDIRIFLGSDGINPIGIYRLDLLRT 177 Query: 170 YNIRLNETQGAAYQDAGFRYQVALLVE 196 I+LNET GA+YQD G +Q+ L + Sbjct: 178 NQIKLNETPGASYQDNGLWFQIFALAK 204 >ZyibD [M] COG0463 Glycosyltransferases involved in cell wall biogenesis Length = 344 Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 82/194 (42%), Gaps = 24/194 (12%) Query: 1 MPSLNIATYIKECMDSVVAQTLQDIEIICVDAGSTDGTREILQEYATXXXXXXXXXXXXK 60 +P N + CM+S++ QT +EII ++ GSTD + EI + YA Sbjct: 12 IPLYNAGDDFRTCMESLITQTWTALEIIIINDGSTDNSVEIAKYYAENYPHVRLLHQANA 71 Query: 61 SYGYQVNWGFDVAKGKYLGIVETDDYIEPEMFQTLYDVAIXXXXXADFVKSDFFF----- 115 N G +VA GKY+ V+ DD + P M++TL +A+ +D+ F Sbjct: 72 GASVARNRGIEVATGKYVAFVDADDEVYPTMYETLMTMALEDDLDVAQCNADWCFRETGE 131 Query: 116 -FADVPKGRQTLEYKLFGSS----STSVKRVSHTDYTNRLVPIDTFMWNGIYKRQFIQKY 170 + +P R L G S +R +H +W G+Y+R I K Sbjct: 132 TWQSIPTDRLRSTGVLTGPDWLRMGLSSRRWTHV------------VWMGVYRRDVIVKN 179 Query: 171 NIRLNETQGAAYQD 184 NI+ G +QD Sbjct: 180 NIKF--IAGLHHQD 191 >ECs4493 [M] COG0463 Glycosyltransferases involved in cell wall biogenesis Length = 338 Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 82/194 (42%), Gaps = 24/194 (12%) Query: 1 MPSLNIATYIKECMDSVVAQTLQDIEIICVDAGSTDGTREILQEYATXXXXXXXXXXXXK 60 +P N + CM+S++ QT +EII ++ GSTD + EI + YA Sbjct: 12 IPLYNAGDDFRTCMESLITQTWTALEIIIINDGSTDNSVEIAKHYAENYPHVRLLHQANA 71 Query: 61 SYGYQVNWGFDVAKGKYLGIVETDDYIEPEMFQTLYDVAIXXXXXADFVKSDFFF----- 115 N G +VA GKY+ V+ DD + P M++TL +A+ +D+ F Sbjct: 72 GASVARNRGIEVATGKYVAFVDADDEVYPTMYETLMTMALEDDLDVAQCNADWSFRETGE 131 Query: 116 -FADVPKGRQTLEYKLFGSS----STSVKRVSHTDYTNRLVPIDTFMWNGIYKRQFIQKY 170 + +P R L G S +R +H +W G+Y+R I K Sbjct: 132 TWQSIPSDRLRSTGVLTGPDWLRMGLSSRRWTHV------------VWMGVYRRDVIVKN 179 Query: 171 NIRLNETQGAAYQD 184 NI+ G +QD Sbjct: 180 NIKF--IAGLHHQD 191 Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 82/194 (42%), Gaps = 24/194 (12%) Query: 1 MPSLNIATYIKECMDSVVAQTLQDIEIICVDAGSTDGTREILQEYATXXXXXXXXXXXXK 60 +P N + CM+S++ QT +EII ++ GSTD + EI + YA Sbjct: 12 IPLYNAGDDFRTCMESLITQTWTALEIIIINDGSTDNSVEIAKYYAENYPHVRLLHQANA 71 Query: 61 SYGYQVNWGFDVAKGKYLGIVETDDYIEPEMFQTLYDVAIXXXXXADFVKSDFFF----- 115 N G +VA GKY+ V+ DD + P M++TL +A+ +D+ F Sbjct: 72 GASVARNRGIEVATGKYVAFVDADDEVYPTMYETLMTMALEDDLDVAQCNADWCFRETGE 131 Query: 116 -FADVPKGRQTLEYKLFGSS----STSVKRVSHTDYTNRLVPIDTFMWNGIYKRQFIQKY 170 + +P R L G S +R +H +W G+Y+R I K Sbjct: 132 TWQSIPTDRLRSTGVLTGPDWLRMGLSSRRWTHV------------VWMGVYRRDVIVKN 179 Query: 171 NIRLNETQGAAYQD 184 NI+ G +QD Sbjct: 180 NIKF--IAGLHHQD 191 >yibD [M] COG0463 Glycosyltransferases involved in cell wall biogenesis Length = 344 Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 82/194 (42%), Gaps = 24/194 (12%) Query: 1 MPSLNIATYIKECMDSVVAQTLQDIEIICVDAGSTDGTREILQEYATXXXXXXXXXXXXK 60 +P N + CM+S++ QT +EII ++ GSTD + EI + YA Sbjct: 12 IPLYNAGDDFRTCMESLITQTWTALEIIIINDGSTDNSVEIAKYYAENYPHVRLLHQANA 71 Query: 61 SYGYQVNWGFDVAKGKYLGIVETDDYIEPEMFQTLYDVAIXXXXXADFVKSDFFF----- 115 N G +VA GKY+ V+ DD + P M++TL +A+ +D+ F Sbjct: 72 GASVARNRGIEVATGKYVAFVDADDEVYPTMYETLMTMALEDDLDVAQCNADWCFRETGE 131 Query: 116 -FADVPKGRQTLEYKLFGSS----STSVKRVSHTDYTNRLVPIDTFMWNGIYKRQFIQKY 170 + +P R L G S +R +H +W G+Y+R I K Sbjct: 132 TWQSIPTDRLRSTGVLTGPDWLRMGLSSRRWTHV------------VWMGVYRRDVIVKN 179 Query: 171 NIRLNETQGAAYQD 184 NI+ G +QD Sbjct: 180 NIKF--IAGLHHQD 191 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 13,279,763 Number of extensions: 500493 Number of successful extensions: 795 Number of sequences better than 1.0e-05: 22 Number of HSP's gapped: 801 Number of HSP's successfully gapped: 22 Length of query: 214 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 112 Effective length of database: 26,614,363 Effective search space: 2980808656 Effective search space used: 2980808656 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 113 (48.1 bits)