BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0515.0037.p
         (717 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FN0930 [M] COG2870 ADP-heptose synthase, bifunctional sugar kina...    60   9e-09
ECU11g0870 [MI] COG0615 Cytidylyltransferase                           55   5e-07

>FN0930 [M] COG2870 ADP-heptose synthase, bifunctional sugar
           kinase/adenylyltransferase
          Length = 160

 Score = 60.5 bits (145), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 3/132 (2%)

Query: 584 YVTGVFDLFHIGHLNILRKSKEQCEYLIAGVLTDELAEHDK-RKRPFISFEERLAIVQQI 642
           +  G FD+ H GH+  L ++K Q + LI GV +D+  +  K   RP  S  +R  ++  +
Sbjct: 30  FTNGCFDILHTGHVTYLNEAKRQGDILIVGVNSDKSVKKLKGETRPINSENDRAFVLDGL 89

Query: 643 KYVDRAIAVDFHNTNKLEAWKQLRYDCHFSGTDHEQEWYWLQKQLQTLGSNMEFIPYTES 702
           K VD  +  D     +L A+  L+   H  G D+++E     K +++ G  +  + + E 
Sbjct: 90  KAVDYTVIFDEDTPEELIAY--LKPSIHVKGGDYKKEDLPETKIVESYGGEVIILNFVEG 147

Query: 703 TSSTKLQQMINK 714
            S+T + + INK
Sbjct: 148 KSTTNIIEKINK 159


>ECU11g0870 [MI] COG0615 Cytidylyltransferase
          Length = 322

 Score = 54.7 bits (130), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 1/66 (1%)

Query: 584 YVTGVFDLFHIGHLNILRKSKEQCEYLIAGVLTDELAEHDKRKRPFISFEERLAIVQQIK 643
           +  G FD+FH GH N LR+SK   +YLIAGV +  L+ + ++  P +  EER  +V+  +
Sbjct: 10  WADGCFDMFHYGHANALRQSKALGDYLIAGVHS-SLSINQEKGLPVMEDEERYEVVEGCR 68

Query: 644 YVDRAI 649
           YVD  +
Sbjct: 69  YVDEVV 74



 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 38/66 (57%)

Query: 584 YVTGVFDLFHIGHLNILRKSKEQCEYLIAGVLTDELAEHDKRKRPFISFEERLAIVQQIK 643
           ++ G FDLFH GH+  LR ++   +YLI G+  DE  +   R  P +S +ER+  +   +
Sbjct: 181 FMDGNFDLFHAGHVASLRIARGMGDYLIVGIHDDETTKEYTRSYPVLSTKERMLTLMACR 240

Query: 644 YVDRAI 649
           YVD  +
Sbjct: 241 YVDEIV 246


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.321    0.139    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 54,563,393
Number of extensions: 2415419
Number of successful extensions: 4021
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4027
Number of HSP's successfully gapped: 5
Length of query: 717
Length of database: 38,378,431
Length adjustment: 114
Effective length of query: 603
Effective length of database: 25,230,355
Effective search space: 15213904065
Effective search space used: 15213904065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 119 (50.4 bits)