BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0515.0020.p
         (65 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SA0747 [K] COG1278 Cold shock proteins                                101   3e-22
BS_cspB [K] COG1278 Cold shock proteins                               100   7e-22
lin1401 [K] COG1278 Cold shock proteins                               100   8e-22
SA1234 [K] COG1278 Cold shock proteins                                 99   1e-21
BS_cspC [K] COG1278 Cold shock proteins                                99   1e-21

>SA0747 [K] COG1278 Cold shock proteins
          Length = 66

 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 48/63 (76%), Positives = 54/63 (85%)

Query: 3  GKVKWFNAEKGYGFIETADGGDVFVHFSAIQTDGFKTLDEGQSVEFDIVEGARGPQAANV 62
          G VKWFNAEKG+GFIE  DG DVFVHFSAI  DG+K+L+EGQ VEFDIVEG RG QAANV
Sbjct: 4  GTVKWFNAEKGFGFIEREDGSDVFVHFSAIAEDGYKSLEEGQKVEFDIVEGDRGEQAANV 63

Query: 63 IKL 65
          +K+
Sbjct: 64 VKM 66


>BS_cspB [K] COG1278 Cold shock proteins
          Length = 67

 Score =  100 bits (248), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 48/64 (75%), Positives = 55/64 (85%)

Query: 1  MEGKVKWFNAEKGYGFIETADGGDVFVHFSAIQTDGFKTLDEGQSVEFDIVEGARGPQAA 60
          +EGKVKWFN+EKG+GFIE     DVFVHFSAIQ +GFKTL+EGQ+V F+IVEG RGPQAA
Sbjct: 2  LEGKVKWFNSEKGFGFIEVEGQDDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGNRGPQAA 61

Query: 61 NVIK 64
          NV K
Sbjct: 62 NVTK 65


>lin1401 [K] COG1278 Cold shock proteins
          Length = 66

 Score =  100 bits (248), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 48/63 (76%), Positives = 54/63 (85%)

Query: 2  EGKVKWFNAEKGYGFIETADGGDVFVHFSAIQTDGFKTLDEGQSVEFDIVEGARGPQAAN 61
          +G VKWFNAEKG+GFIE  +G DVFVHFSAIQ DGFK+LDEGQ+V FD+ EG RGPQAAN
Sbjct: 3  QGTVKWFNAEKGFGFIERENGDDVFVHFSAIQGDGFKSLDEGQAVTFDVEEGQRGPQAAN 62

Query: 62 VIK 64
          V K
Sbjct: 63 VQK 65


>SA1234 [K] COG1278 Cold shock proteins
          Length = 66

 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/64 (71%), Positives = 55/64 (85%)

Query: 2  EGKVKWFNAEKGYGFIETADGGDVFVHFSAIQTDGFKTLDEGQSVEFDIVEGARGPQAAN 61
          +G VKWFNAEKG+GFIE     DVFVHFSAI  DG+K+L+EGQ+VEF++VEG RGPQAAN
Sbjct: 3  QGTVKWFNAEKGFGFIEVEGENDVFVHFSAINQDGYKSLEEGQAVEFEVVEGDRGPQAAN 62

Query: 62 VIKL 65
          V+KL
Sbjct: 63 VVKL 66


>BS_cspC [K] COG1278 Cold shock proteins
          Length = 66

 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/63 (74%), Positives = 54/63 (85%)

Query: 2  EGKVKWFNAEKGYGFIETADGGDVFVHFSAIQTDGFKTLDEGQSVEFDIVEGARGPQAAN 61
          +G VKWFNAEKG+GFIE  +G DVFVHFSAIQ+DGFK+LDEGQ V FD+ +GARG QAAN
Sbjct: 3  QGTVKWFNAEKGFGFIERENGDDVFVHFSAIQSDGFKSLDEGQKVSFDVEQGARGAQAAN 62

Query: 62 VIK 64
          V K
Sbjct: 63 VQK 65


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.138    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 5,088,389
Number of extensions: 189954
Number of successful extensions: 466
Number of sequences better than 1.0e-05: 113
Number of HSP's gapped: 388
Number of HSP's successfully gapped: 113
Length of query: 65
Length of database: 38,378,431
Length adjustment: 37
Effective length of query: 28
Effective length of database: 34,111,073
Effective search space: 955110044
Effective search space used: 955110044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)