BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0514.0014.p (291 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0481 [G] COG0395 ABC-type sugar transport system, permease com... 194 1e-49 BS_ytcP [G] COG0395 ABC-type sugar transport system, permease co... 188 9e-48 BS_lplC [G] COG0395 ABC-type sugar transport system, permease co... 187 1e-47 SP1797 [G] COG0395 ABC-type sugar transport system, permease com... 171 1e-42 BH1066 [G] COG0395 ABC-type sugar transport system, permease com... 156 3e-38 >BH0481 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 194 bits (494), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 107/284 (37%), Positives = 163/284 (57%), Gaps = 2/284 (0%) Query: 8 LFDICNNIFLLMIALVCTYPFLYIFFLSISDGRSIASGDVAFFPKNVNFEAYQYILTNSK 67 +F+I N +FL + +++C PF++I S + + FP + +AY+YI + Sbjct: 11 VFNIFNYLFLFLFSMICFLPFVHIVAGSFASVEEVLQKRFILFPTTFSLDAYRYIFSTDI 70 Query: 68 LGIFRGLLNSGIYXXXXXXXXXXXXYMTAYVLSRKQIKGRFLIMSLFVFSWVFEAGIIPA 127 IFR L+ S + + AY LSRK + GR ++M L VF+ +F G+IP Sbjct: 71 --IFRSLIISILVTVVGTGFSMFLTSLMAYGLSRKDLDGRRVLMFLVVFTMLFSGGMIPT 128 Query: 128 YIVLNKLGFVDNWLVMIIPNAINVQFLIITKTFLDGLPVELEEAAKIDGANDFQIMSRVF 187 ++V+ LG +D + +IIP AIN LII K F +P LEE+AKIDG ND I R+ Sbjct: 129 FLVVRSLGLLDTYWALIIPTAINAFNLIILKNFFQNIPESLEESAKIDGCNDVGIFFRIV 188 Query: 188 LAISKPILATIGVFYAVFIWNQYLMPLIYLQNPNLQTIQVMLKKLVISSGDSNTAFRTII 247 +S P +ATI +FYAV WN ++ ++YL + ++ IQV+L+++VI S + Sbjct: 189 FPLSMPAIATISLFYAVTYWNTFMQAILYLNDSSMWPIQVLLRQIVIMSSGMQGDLTELG 248 Query: 248 QDGIMLNPGNLKAAAIFVAMVPIVLVYPFVQKYFKKGILLGSVK 291 +M +K A I VA +P+++VYPF+QK+F KG LLGSVK Sbjct: 249 AGFVMPPEQTIKMAVIVVATIPVLIVYPFIQKHFAKGALLGSVK 292 >BS_ytcP [G] COG0395 ABC-type sugar transport system, permease component Length = 286 Score = 188 bits (477), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 110/287 (38%), Positives = 160/287 (55%), Gaps = 3/287 (1%) Query: 5 KISLFDICNNIFLLMIALVCTYPFLYIFFLSISDGRSIASGDVAFFPKNVNFEAYQYILT 64 K LFD+ FLLM AL+C PF+++ S + + S P + +AY+YI + Sbjct: 2 KNRLFDMLIYGFLLMFALICVLPFIHVIAASFATVEEVVSKKFILIPTTFSLDAYRYIFS 61 Query: 65 NSKLGIFRGLLNSGIYXXXXXXXXXXXXYMTAYVLSRKQIKGRFLIMSLFVFSWVFEAGI 124 I++ LL S + AY LSR+ + GR +M L VF+ +F G+ Sbjct: 62 TDI--IYKSLLVSVFVTVIGTAVSMFLSSLMAYGLSRRDLIGRQPLMFLVVFTMLFSGGM 119 Query: 125 IPAYIVLNKLGFVDNWLVMIIPNAINVQFLIITKTFLDGLPVELEEAAKIDGANDFQIMS 184 IP ++V+ LG +D++ +I+P AIN LII K F +P LEE+AKIDG ND I Sbjct: 120 IPTFLVVKSLGLLDSYWALILPTAINAFNLIILKNFFQNIPSSLEESAKIDGCNDLGIFF 179 Query: 185 RVFLAISKPILATIGVFYAVFIWNQYLMPLIYLQNPNLQTIQVMLKKLVISSGDSNTAFR 244 ++ L +S P +ATI +FYAV WN Y+ ++YL + IQV+L+++VI S Sbjct: 180 KIVLPLSLPAIATISLFYAVTYWNTYMTAILYLNDSAKWPIQVLLRQIVIVSSGMQGDMS 239 Query: 245 TIIQDGIMLNPGNLKAAAIFVAMVPIVLVYPFVQKYFKKGILLGSVK 291 + G +K A I VA +P++LVYPF+QK+F KG LLGSVK Sbjct: 240 E-MGSGSPPPEQTIKMAVIVVATIPVLLVYPFIQKHFAKGALLGSVK 285 >BS_lplC [G] COG0395 ABC-type sugar transport system, permease component Length = 295 Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 108/292 (36%), Positives = 168/292 (57%), Gaps = 5/292 (1%) Query: 1 MMRTKIS-LFDICNNIFLLMIALVCTYPFLYIFFLSISDGRSIASGDVAFFPKNVNFEAY 59 M TK +FD+CN +FL + + PFLYI S + +A FPK +AY Sbjct: 7 MHNTKAGRVFDVCNILFLGGVGAITILPFLYIIAGSFATEAELAQRSFFIFPKTFTLDAY 66 Query: 60 QYILTNSKLGIFRGLLNSGIYXXXXXXXXXXXXYMTAYVLSRKQIKGRFLIMSLFVFSWV 119 +Y+ + R + S + AY L+++ +KGR L+++L +FS + Sbjct: 67 KYVFSTPTF--LRSMGVSIFITVVGTAVQLFFTFTMAYPLAKRHVKGRNLLLNLVIFSML 124 Query: 120 FEAGIIPAYIVLNKLGFVDNWLVMIIPNAINVQFLIITKTFLDGLPVELEEAAKIDGAND 179 F G+IP Y+V+ LG +D + +I+P AIN LII K F LP ELEE+AKIDG ++ Sbjct: 125 FSGGMIPTYLVVKSLGLLDTYWALILPMAINPFNLIIIKNFFQQLPRELEESAKIDGCSE 184 Query: 180 FQIMSRVFLAISKPILATIGVFYAVFIWNQYLMPLIYLQNPNLQTIQVMLKKLVISSGDS 239 + R+ L +SKP++AT +FYAV IWN + L+Y+ + +Q++L+++ I S + Sbjct: 185 IGVFWRIALPLSKPVIATFALFYAVGIWNDFFHALLYINDSAKWPLQMVLRQVTILSDLT 244 Query: 240 NTAFRTIIQDGIMLNPGNLKAAAIFVAMVPIVLVYPFVQKYFKKGILLGSVK 291 T T +Q+ + G +K A I +A +PI+ VYPF+QK+F KG+L+GSVK Sbjct: 245 ATNGDT-MQNAVPPEQG-IKLAVIVIATLPILAVYPFLQKHFAKGMLIGSVK 294 >SP1797 [G] COG0395 ABC-type sugar transport system, permease component Length = 305 Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 96/282 (34%), Positives = 157/282 (55%), Gaps = 3/282 (1%) Query: 11 ICNNIFLLMIALVCTYPFLYIFFLSISDGRSIASGDVAFFPKNVNFEAYQYILTNSKLGI 70 + N I ++ I L+ P LYI S D + + S ++F P + E YQ + ++ I Sbjct: 25 LLNKIIIVFIVLMTLLPLLYIVVASFMDPKVLVSRGISFNPADWTVEGYQRVFSDQ--SI 82 Query: 71 FRGLLNSGIYXXXXXXXXXXXXYMTAYVLSRKQIKGRFLIMSLFVFSWVFEAGIIPAYIV 130 RG +NS +Y TAY LS+K + GR I + + F G++P Y++ Sbjct: 83 LRGFINSLLYSFGFAALTVLLSVFTAYPLSKKDLVGRRWINYFLIVTMFFGGGLVPTYLL 142 Query: 131 LNKLGFVDNWLVMIIPNAINVQFLIITKTFLDGLPVELEEAAKIDGANDFQIMSRVFLAI 190 + +LG ++ +I+P A+NV +I+ + + GLP EL EAA IDGAND QI ++ L + Sbjct: 143 VKELGMLNTPWAIIVPGAVNVWNIILARAYFQGLPEELVEAAVIDGANDLQIFFKIMLPL 202 Query: 191 SKPILATIGVFYAVFIWNQYLMPLIYLQNPNLQTIQVMLKKLVISSGDSNTAFRTIIQDG 250 +KPI+ + ++ V WN Y +IY+++PNL+ +Q++L+K++I S Sbjct: 203 AKPIMFVLFLYAFVGQWNSYFDAMIYIKDPNLEPLQLVLRKILIQSQPGQDMIGAQAAMN 262 Query: 251 IMLNPGNL-KAAAIFVAMVPIVLVYPFVQKYFKKGILLGSVK 291 M L K A I ++ +P++++YPF QKYF KGI+ GS+K Sbjct: 263 EMKRLAELIKYATIVISSLPLIVMYPFFQKYFDKGIMAGSLK 304 >BH1066 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 94/287 (32%), Positives = 154/287 (53%), Gaps = 8/287 (2%) Query: 8 LFDICNNIFLLMIALVCTYPFLYIFFLSISDGRSIASGDVAFFPKNVNFEAYQYILTNSK 67 +F N FLL+ A++C P ++IF +S+S + A+ V F P + +AY+ + N Sbjct: 11 VFTAFNYTFLLLFAVLCILPLVHIFAVSLSGSGAAAANLVMFLPVDFTLDAYERTIANDN 70 Query: 68 LGIFRGLLNSGIYXXXXXXXXXXXXYMTAYVLSR--KQIKGRFLIMSLFVFSWVFEAGII 125 R L S + AY LS+ + KGR + FV + +F G++ Sbjct: 71 F--IRSFLISVVRVVLGTVISMGAMLCAAYALSKEDRDFKGRKFYIWFFVITMLFNGGLV 128 Query: 126 PAYIVLNKLGFVDNWLVMIIPNAINV-QFLIITKTFLDGLPVELEEAAKIDGANDFQIMS 184 P Y+V+ LG + +++P AIN +++ F +P LEE+A IDGAN FQI Sbjct: 129 PTYMVVTGLGLTNTIWALVLPPAINAFNLILLLNFFRTAVPKSLEESAFIDGANHFQIFL 188 Query: 185 RVFLAISKPILATIGVFYAVFIWNQYLMPLIYLQNPNLQTIQVMLKKLVISSGDSNTAFR 244 +++L IS P +AT+ +F VF WN + +IY + +Q L+ +V+ S Sbjct: 189 KIYLPISVPAIATVSLFTMVFHWNSWFDGMIYNNDARNYPLQTFLQTIVVQQDFSQITDA 248 Query: 245 TIIQDGIMLNPGNLKAAAIFVAMVPIVLVYPFVQKYFKKGILLGSVK 291 +++ L+ ++AA IF+A +P+++VYPF+QKYF KGI+LG+ K Sbjct: 249 ETLRN---LSQRTVQAAQIFIAALPMLIVYPFIQKYFVKGIVLGAEK 292 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.331 0.145 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,410,522 Number of extensions: 699875 Number of successful extensions: 11963 Number of sequences better than 1.0e-05: 140 Number of HSP's gapped: 11802 Number of HSP's successfully gapped: 140 Length of query: 291 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 186 Effective length of database: 26,268,361 Effective search space: 4885915146 Effective search space used: 4885915146 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 115 (48.9 bits)