BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0514.0013.p (323 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1065 [G] COG4209 ABC-type polysaccharide transport system, per... 237 2e-62 BH0484 [G] COG4209 ABC-type polysaccharide transport system, per... 229 6e-60 BH1911 [G] COG4209 ABC-type polysaccharide transport system, per... 199 4e-51 BS_lplB [G] COG4209 ABC-type polysaccharide transport system, pe... 198 9e-51 SP1798 [G] COG4209 ABC-type polysaccharide transport system, per... 181 1e-45 >BH1065 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 317 Score = 237 bits (605), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 112/277 (40%), Positives = 190/277 (68%), Gaps = 3/277 (1%) Query: 47 FKLAPLGGMIIAFQDFSAFRGVLGSPFVGLEHFQRIFEDPYIWTLVKNTIILAFYSLLFT 106 F+ P+ G+++AFQD+ + G GS +VGL+HF +FE Y ++ NT++++ ++F Sbjct: 44 FQYGPMFGIVMAFQDYKPWLGFTGSEWVGLQHFITMFEYDYAKQVIWNTLVISVLKMIFG 103 Query: 107 FPIPILFALLLNEVRVRWIKGSVQSLSFLPYFISSAVMVSILYTLLSPSTGLVNDILARF 166 +PI+ ALLLNE+ +K +VQ++ +LPYF+S ++ IL +LSP G+VN L F Sbjct: 104 LIVPIIVALLLNEMYQMVVKRTVQTIIYLPYFLSWVILGGILIDVLSPDGGIVNQALGLF 163 Query: 167 GLDTIYFVAEPGWFRSNYVLLQVWQTFGYSAIVYIAAMAAIDPSVYESASLDGASRFQQM 226 G+D I+F+ WFR+ V+ +W+ G++ IV++AA+ A++P++YE+A +DGA+R++Q Sbjct: 164 GIDPIFFLGSNDWFRTTVVISDLWKETGFNTIVFLAAITAVNPNLYEAAVVDGANRWKQT 223 Query: 227 LHITLPSLKPTIAIMLIISVGNIFTVDLDRILLMYNQSVYETADVIQTYVYRLAFASTGF 286 LHITLP++ P I ++ +S+GNI D+I +YN VY+T D+I TYVYR++ + Sbjct: 224 LHITLPAMLPIIIVVATLSLGNILNAGFDQIFNLYNPLVYQTGDIIDTYVYRVSLVNG-- 281 Query: 287 PEYSYGTAVNLLKSVVAYILVVGTNKLSTKYSDTRLF 323 ++SYGTAV L KS+++ +L++ +L+ KY++ R+F Sbjct: 282 -DFSYGTAVGLFKSLISLVLIIIGYRLAYKYANWRIF 317 >BH0484 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 325 Score = 229 bits (583), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 121/323 (37%), Positives = 200/323 (61%), Gaps = 4/323 (1%) Query: 2 VEKVITSERMTP-LPQKTRIRRFLAYMNTNKXXXXXXXXXXXXXXXFKLAPLGGMIIAFQ 60 VE+ + E P +P+K R ++ L + NK FK P+ G+IIAFQ Sbjct: 6 VEQALPIESAAPSIPKKVRRQQKLKRIFRNKYLYLMILPGLVYFLIFKYVPMWGLIIAFQ 65 Query: 61 DFSAFRGVLGSPFVGLEHFQRIFEDPYIWTLVKNTIILAFYSLLFTFPIPILFALLLNEV 120 D+ F GV GS +VG +HF+R+F +P + L++NT++L Y+L+F FP+PI+ A+LLNE+ Sbjct: 66 DYQPFLGVTGSEWVGFKHFERLFTEPTFFQLLRNTLVLFLYNLIFFFPVPIILAVLLNEI 125 Query: 121 RVRWIKGSVQSLSFLPYFISSAVMVSILYTLLSPSTGLVNDILARFGLDTIYFVAEPGWF 180 R+ K VQ++ ++P+F+S ++VS+ Y L + G++N+I+ + F+ WF Sbjct: 126 RLMVFKRFVQTMIYIPHFMSWVIVVSLTYVLFTTDGGVINEIIYSITGKNVNFLMSEDWF 185 Query: 181 RSNYVLLQVWQTFGYSAIVYIAAMAAIDPSVYESASLDGASRFQQMLHITLPSLKPTIAI 240 R Y+L +W+ G++ I+Y AA+AAIDPS+YE+A +DGA+RF+Q+ HITLP+++ I + Sbjct: 186 RPLYILQVIWREAGWATIIYFAAIAAIDPSLYEAAKMDGANRFRQIWHITLPAIRSVIVV 245 Query: 241 MLIISVGNIFTVDLDRILLMYNQSVYETADVIQTYVYRLAFASTGFPEYSYGTAVNLLKS 300 +LI+ +G+I + + + LM N E A++ TYVY ++SY TAV KS Sbjct: 246 LLILKIGDILELGFEHVFLMLNAMNREVAEIFDTYVYTAGLKEG---QFSYSTAVGFFKS 302 Query: 301 VVAYILVVGTNKLSTKYSDTRLF 323 +V I+V+ N L+ K+ + ++ Sbjct: 303 IVGLIMVMLANWLAKKFGEEGVY 325 >BH1911 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 319 Score = 199 bits (507), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 102/275 (37%), Positives = 170/275 (61%), Gaps = 5/275 (1%) Query: 47 FKLAPLGGMIIAFQDFSAFRGVLGSPFVGLEHFQRIFEDPYIWTLVKNTIILAFYSLLFT 106 F PL G +AFQ+F +VGL+HF +F+D + +++NT+ ++ L+ Sbjct: 44 FNYFPLWGWTMAFQNFRPGLSFFEQEWVGLQHFIELFQDNRFYLVLRNTLAMSIMGLIVG 103 Query: 107 FPIPILFALLLNEVRVRWIKGSVQSLSFLPYFISSAVMVSILYTLLSPSTGLVNDILARF 166 F +PILFA+LLNEVR K +VQ++S+LP+F+S V+ I+ +LS G+VN +L F Sbjct: 104 FTMPILFAVLLNEVRHMVFKRTVQTVSYLPHFVSWVVVAGIVTKMLSIDGGIVNQLLMAF 163 Query: 167 GL--DTIYFVAEPGWFRSNYVLLQVWQTFGYSAIVYIAAMAAIDPSVYESASLDGASRFQ 224 G + F+A+ WF L +W+ G+++I+++AAMA IDP +YE+A +DGASR++ Sbjct: 164 GFVDQPVQFMAKGEWFWVIVTLSDLWKEMGWNSIIFLAAMAGIDPQLYEAAKVDGASRWR 223 Query: 225 QMLHITLPSLKPTIAIMLIISVGNIFTVDLDRILLMYNQSVYETADVIQTYVYRLAFAST 284 Q+ HITLP ++PTI ++LI+S+G++ + ++ L+ N V + ++V+ Y Sbjct: 224 QIWHITLPGIRPTILVILILSIGHLMAIGFEKQFLLGNPLVVDYSEVLDLYALNYGL--- 280 Query: 285 GFPEYSYGTAVNLLKSVVAYILVVGTNKLSTKYSD 319 G YSYGTA+ + SVV IL+ N + ++++ Sbjct: 281 GLGRYSYGTAIGIFNSVVCIILLFLANGIFKRFTN 315 >BS_lplB [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 318 Score = 198 bits (504), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 109/320 (34%), Positives = 185/320 (57%), Gaps = 3/320 (0%) Query: 4 KVITSERMTPLPQKTRIRRFLAYMNTNKXXXXXXXXXXXXXXXFKLAPLGGMIIAFQDFS 63 + + +R P+ + ++A + +K FK P+ G++IAF+D+S Sbjct: 2 ETVPKKRDAPVLTAGKGISWMAALKRDKWLYLLLIPGLLYFLIFKYLPMWGVLIAFKDYS 61 Query: 64 AFRGVLGSPFVGLEHFQRIFEDPYIWTLVKNTIILAFYSLLFTFPIPILFALLLNEVRVR 123 + G S +VG ++F+ F +P + L++NT++LA LLF FP P++ ALLLNEVR Sbjct: 62 PYLGFWKSEWVGFDYFKDFFMNPDFFRLLRNTLMLASLDLLFAFPAPLILALLLNEVRKA 121 Query: 124 WIKGSVQSLSFLPYFISSAVMVSILYTLLSPSTGLVNDILARFGLDTIYFVAEPGWFRSN 183 K +Q+ ++P+F+S ++VSI + + TG++N ++ + I F+++ WFR Sbjct: 122 VYKRCIQTFIYVPHFVSWTIVVSITFVFFTVDTGVINKLIMSLTGEQISFLSDADWFRPM 181 Query: 184 YVLLQVWQTFGYSAIVYIAAMAAIDPSVYESASLDGASRFQQMLHITLPSLKPTIAIMLI 243 V+ +W+ G+ I+++AA+A +D YE+A +DGA RF++M HITLP+++ TI ++LI Sbjct: 182 IVMQSIWKETGWGTILFLAALATVDQEQYEAAIMDGAGRFRRMWHITLPAIRSTIIVLLI 241 Query: 244 ISVGNIFTVDLDRILLMYNQSVYETADVIQTYVYRLAFASTGFPEYSYGTAVNLLKSVVA 303 + +G+ + +++ LM N AD+ TYVY + YSY TAV L KSVV Sbjct: 242 LRIGSFLNLGFEQVYLMTNSLNRSVADIFDTYVYMMGITQGA---YSYSTAVGLFKSVVG 298 Query: 304 YILVVGTNKLSTKYSDTRLF 323 IL+ G N ++ K+ LF Sbjct: 299 IILIFGANYIAKKFDQEGLF 318 >SP1798 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 305 Score = 181 bits (459), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 92/275 (33%), Positives = 162/275 (58%), Gaps = 5/275 (1%) Query: 47 FKLAPLGGMIIAFQDFSAFRGVLGSPFVGLEHFQRIFEDPYIWTLVKNTIILAFYSLLFT 106 FK P+ G++IAF+D++ +G+LGS ++G F + P L+ NT+ L+ Y LL Sbjct: 34 FKYIPMYGVLIAFKDYNPLKGILGSDWIGFSEFTKFISSPNFGILLANTLKLSIYGLLLG 93 Query: 107 FPIPILFALLLNEVRVRWIKGSVQSLSFLPYFISSAVMVSILYTLLSPSTGLVNDILARF 166 F PI+ A++LN++ +K +Q + + P FIS V+V +++ S G +N+ L+ F Sbjct: 94 FLPPIILAIMLNQLLSEKVKKRIQLILYAPNFISVVVIVGMIFLFFSVG-GPINNFLSMF 152 Query: 167 GLDTIYFVAEPGWFRSNYVLLQVWQTFGYSAIVYIAAMAAIDPSVYESASLDGASRFQQM 226 G+ F+ P +FR Y+ +WQ G+++ +Y A + +DP++ E+A LDGA+ FQ++ Sbjct: 153 GMKA-DFLTNPDFFRPLYIFSGIWQGMGWASTLYTATLVNVDPALVEAARLDGANIFQRI 211 Query: 227 LHITLPSLKPTIAIMLIISVGNIFTVDLDRILLMYNQSVYETADVIQTYVYRLAFASTGF 286 HI +P+LKP + I +++ G I V ++ LM T+++I TYVY++ S Sbjct: 212 WHIDIPALKPIMVIQFVLAAGGIMNVGYEKAFLMQTSLNLPTSEIISTYVYKVGLVSG-- 269 Query: 287 PEYSYGTAVNLLKSVVAYILVVGTNKLSTKYSDTR 321 +YSY TAV L +V+ +L+V N++ + ++ Sbjct: 270 -DYSYSTAVGLFNAVINVVLLVAVNQIVKRMNNGE 303 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.327 0.141 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,765,949 Number of extensions: 711071 Number of successful extensions: 2588 Number of sequences better than 1.0e-05: 160 Number of HSP's gapped: 2468 Number of HSP's successfully gapped: 160 Length of query: 323 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 216 Effective length of database: 26,037,693 Effective search space: 5624141688 Effective search space used: 5624141688 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 116 (49.3 bits)