BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0514.0012.p (529 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SP1796 [G] COG1653 ABC-type sugar transport system, periplasmic ... 75 4e-13 BH0482 [G] COG1653 ABC-type sugar transport system, periplasmic ... 60 7e-09 BS_lplA [G] COG1653 ABC-type sugar transport system, periplasmic... 56 2e-07 >SP1796 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 538 Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 111/487 (22%), Positives = 196/487 (40%), Gaps = 61/487 (12%) Query: 73 VEKATGTTVEFVPGGSNDDEYYASVDQKIISGTFPDS----GIVSVSQATVYGAQGAFVD 128 +EK TG +++ S ++ + I SG PD+ G V + +G + Sbjct: 72 LEKETGVHIDWTNYQS---DFAEKRNLDISSGDLPDAIHNDGASDVDLMN-WAKKGVIIP 127 Query: 129 LAPYIDKFGPNIKSYIEKNPTYKTMITDKEGHIYGLV---------AEAPRFADFIFYRA 179 + IDK+ PN+K +++ P YK ++T +GHIY D + Sbjct: 128 VEDLIDKYMPNLKKILDEKPEYKALMTAPDGHIYSFPWIEELGDGKESIHSVNDMAWINK 187 Query: 180 DHFEKAGITKAPQTIDELTDVMRKLKAYYGKDNKN---------YYPMVGREHYFRFQSV 230 D +K G+ + P+T D+L V+ K G N N + G E + + Sbjct: 188 DWLKKLGL-EMPKTTDDLIKVLEAFKN--GDPNGNGEADEIPFSFISGNGNEDFKFLFAA 244 Query: 231 FNAAANFDDGISKGIYANGKTGTDLYSDGYKKMVEWYKTLYSEGLIDPEWVAGSGTEESW 290 F N DD + G +GK +D YK+ V++ + L +GLID E E W Sbjct: 245 FGIGDN-DDHLVVG--NDGKVDFTADNDNYKEGVKFIRQLQEKGLIDKE-----AFEHDW 296 Query: 291 ESKMLTGQGSISYDHLTRPSWFMDNGGPENDPDYNIAILPYLKDLNGKPSVQTTETQYNT 350 S + G + T W +N N+ + +LP L +G+ V T Sbjct: 297 NSYIAKGHDQKFGVYFT---WDKNNVTGSNE---SYDVLPVLAGPSGQKHVARTNGMGFA 350 Query: 351 LRAMVVNTNSKDKAETIIKFLDYLYSDEGQTLVSWGVEGESYK------DEGGNKQYIVD 404 MV+ + +K+ E K++D Y+ +WG G+ + D+ N + Sbjct: 351 RDKMVITSVNKN-LELTAKWIDAQYAPLQSVQNNWGTYGDDKQQNIFELDQASNSLKHLP 409 Query: 405 FSE------QEATPAGEPRWSFLNDRLTFVKPVDNDAFYSWNTELVHNAAHELFTDENLK 458 + ++ T G P + L+ V + +DA W +L+ + N+ Sbjct: 410 LNGTAPAELRQKTEVGGPL-AILDSYYGKVTTMPDDA--KWRLDLIKEYYVPYMS--NVN 464 Query: 459 TGVTVTYTADQAKQLADLSAKVNEAVTSLVTEFVNGKRPMSEWDTFLGEMETAGYKKIVA 518 V T + ++A + A +N+ + E++ +EWD + E+E G +A Sbjct: 465 NYPRVFMTQEDLDKIAHIEADMNDYIYRKRAEWIVNGNIDTEWDDYKKELEKYGLSDYLA 524 Query: 519 LQQEAYD 525 ++Q+ YD Sbjct: 525 IKQKYYD 531 >BH0482 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 512 Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 90/420 (21%), Positives = 169/420 (40%), Gaps = 44/420 (10%) Query: 73 VEKATGTTVEF--VPGGSNDDEYYASVDQKIISGTFPDS-GIVSVSQATVYGA--QGAFV 127 +E+ T T ++ VP +D V+ + SG P + ++V A G F Sbjct: 74 IEELTNTNLDLIWVPDAVKED----RVNAALASGNLPKVITLQDFRTSSVLNAFRSGQFW 129 Query: 128 DLAPYIDKFGPNIKSYIEKNPTYKTMITDKEGHIYGLVAEAPRFADFIFYRADHFEKAGI 187 ++ PY+D+F PN+ E N T ++ +G IYG+ E P + R D E G+ Sbjct: 130 EIGPYLDEF-PNLS---EMNETILENVS-VDGKIYGIYRERPLSRQGVVIRQDWLENLGL 184 Query: 188 TKAPQTIDELTDVMRKLKAYYGKDNKNYYPMVGREHY-------FRFQSVFNAAAN---F 237 + P ++EL +V R Y + VG F+ + ++ N F Sbjct: 185 -EMPTNLEELYEVARAF-TYDDPNGSGADDTVGFTDRNDLIFGAFKTLASYHGTPNEWGF 242 Query: 238 DDGISKGIYANGKTGTDLYSDGYKKMVEWYKTLYSEGLIDPEWVAGSGTEESWESKMLTG 297 DD GK + +D Y + + + K+LY EGLI+ E+ S +E + +TG Sbjct: 243 DD--------EGKLMPEFMTDEYVETMNYMKSLYDEGLINTEFPVTS--KEQQQELFMTG 292 Query: 298 QGSISYDHLTRPSWFMDNGGPENDPDYNIAILPYLKDLNGKPSVQTTETQYNTLRAMVVN 357 + I ++ D N P+ +AI + +G+ V + Sbjct: 293 RAGIYVGNMVDARNLRDKAKDIN-PEMEVAITNRIAGPDGEDRVWAQGGHNGIFAIPKSS 351 Query: 358 TNSKDKAETIIKFLDYLYSDEGQTLVSWGVEGESYKDEGGNKQYIVDFSEQEATPAGEPR 417 ++ + + I+ F D + ++ L+++G+E Y+ G ++ + + +P Sbjct: 352 VETEAELKRILAFFDRIAEEDVYNLMAYGIEDVHYETIDGEYFERIEENLDDWAAEVQPL 411 Query: 418 WSFLNDRLTFVKPVDNDAFYSW-------NTELVHNAAHELFTDENLKTGVTVTYTADQA 470 S + + ++K + + + N +V N A LF+ + G + D A Sbjct: 412 VSLVAREMNYLKAYGDPLYEEYERLTEDNNEIIVTNPAEPLFSPTYTERGTELQKIIDDA 471 >BS_lplA [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 502 Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 82/345 (23%), Positives = 146/345 (42%), Gaps = 45/345 (13%) Query: 73 VEKATG--TTVEFVPGGSNDDEYYASVDQKIISGTFPDSGIVSVSQATVYGA--QGAFVD 128 +EK TG V +VP S +D++ + + SG P + ++ A + GAF + Sbjct: 60 LEKYTGKEIKVTWVPDSSYNDKF----NIVMASGEMPHAIVIKDKSAGFIKSVKAGAFWE 115 Query: 129 LAPYIDKFGPNIKSYIEKNPTYKTMITDKEGHIYGLVAEAPRFADFIFYRADHFEKAGIT 188 L+PY+ + N+ EK ++ G +YG+ + R D + G+ Sbjct: 116 LSPYLKDY-KNLSQADEKILKNSSV----NGEVYGIYRTRDLIRACMIIRTDWLKNVGLD 170 Query: 189 KAPQTIDELTDVMRKLKAY----YGKDNKNYYPMV-------GREHYFRFQSVFNAAANF 237 P+T+D+ +V++ K GKD+ Y MV G + ++ A N Sbjct: 171 -MPETLDDFYEVLKAFKEKDPDGNGKDDT--YGMVVPKWMGLGNGSPWDVLQIWFGAPN- 226 Query: 238 DDGISKGIYANGKTGTDLYSDGYKKMVEWYKTLYSEGLIDPEWVAGSGTEESWESKMLTG 297 G+ NGK D + Y + ++K LY EGLI+ ++ + W ++ G Sbjct: 227 ----RYGV-ENGKLIPDFTTKEYMDALTFFKKLYDEGLINKDFAVMDSAK--WNDPVVKG 279 Query: 298 QGSISYDHLTRPSWFMDNGGPENDPDYNIA-ILPYLKDLNGKPSVQTTETQYNTLRAMVV 356 + + D +R S ++ + +I I+ L+ NGK + T+ M+ Sbjct: 280 KAGVIVDTGSRASQIQSAMEEADESNKDIIDIVGSLEGPNGKRTFPTS-----GYSGMIT 334 Query: 357 NTNSKDKAET----IIKFLDYLYSDEGQTLVSWGVEGESYKDEGG 397 S K E ++ FLD + E Q L + GV+G +Y+ + G Sbjct: 335 IPKSSVKTEKELKEVLSFLDKMNDKEAQILTNNGVKGRNYELKDG 379 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.314 0.133 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 38,872,189 Number of extensions: 1714478 Number of successful extensions: 2221 Number of sequences better than 1.0e-05: 5 Number of HSP's gapped: 2220 Number of HSP's successfully gapped: 5 Length of query: 529 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 418 Effective length of database: 25,576,357 Effective search space: 10690917226 Effective search space used: 10690917226 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 118 (50.1 bits)