BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0514.0001.p
         (79 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_cotJC [P] COG3546 Mn-containing catalase                           132   1e-31
CAC1338 [P] COG3546 Mn-containing catalase                             98   3e-21
CAC2800 [P] COG3546 Mn-containing catalase                             61   4e-10
alr3090 [P] COG3546 Mn-containing catalase                             51   4e-07
BS_ydbD [P] COG3546 Mn-containing catalase                             50   6e-07

>BS_cotJC [P] COG3546 Mn-containing catalase
          Length = 189

 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 59/79 (74%), Positives = 76/79 (96%)

Query: 1   VPWTATYIQAKGDPLADLYEDIAAEEKARATYQWLIDMTDDVDLQDSLKFLREREIVHAL 60
           VP+TA+YIQAKGDP+ADLYEDIAAEEKARATYQWLID++DD DL DSL+FLREREIVH++
Sbjct: 111 VPFTASYIQAKGDPIADLYEDIAAEEKARATYQWLIDISDDPDLNDSLRFLREREIVHSM 170

Query: 61  RFKESVQIIIDEREQKRVF 79
           RF+E+V+I+ +ER++K++F
Sbjct: 171 RFREAVEILKEERDKKKIF 189


>CAC1338 [P] COG3546 Mn-containing catalase
          Length = 200

 Score = 97.8 bits (242), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 43/70 (61%), Positives = 59/70 (84%)

Query: 2   PWTATYIQAKGDPLADLYEDIAAEEKARATYQWLIDMTDDVDLQDSLKFLREREIVHALR 61
           P+TA YIQ+KGDP+ DLYED+AAE+KAR+TY++LI + DD D+ + LKFLRERE+VH  R
Sbjct: 113 PFTAAYIQSKGDPITDLYEDLAAEQKARSTYEYLITLCDDPDVIEPLKFLREREVVHFQR 172

Query: 62  FKESVQIIID 71
           F E+++I+ D
Sbjct: 173 FGEALRIVQD 182


>CAC2800 [P] COG3546 Mn-containing catalase
          Length = 225

 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 46/75 (61%)

Query: 2   PWTATYIQAKGDPLADLYEDIAAEEKARATYQWLIDMTDDVDLQDSLKFLREREIVHALR 61
           PWTA Y+   GD +ADL  +IA+E++A+  Y++L    +D +++ ++ FL  RE  H   
Sbjct: 115 PWTANYVSVTGDIVADLLSNIASEQRAKVVYEYLYRQINDKEVRRTIDFLLNREEAHNAL 174

Query: 62  FKESVQIIIDEREQK 76
           F+E++  + +E   K
Sbjct: 175 FREALNKVKNEGSNK 189


>alr3090 [P] COG3546 Mn-containing catalase
          Length = 359

 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 4/64 (6%), Positives = 12/64 (18%)

Query: 3   WTATYIQAKGDPLADLYEDIAAEEKARATYQWLIDMTDDVDLQDSLKFLREREIVHALRF 62
            +          L      +    +    +   +    +V    ++     R        
Sbjct: 111 ASLDEPVTVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGA 170

Query: 63  KESV 66
            E  
Sbjct: 171 TEKQ 174


>BS_ydbD [P] COG3546 Mn-containing catalase
          Length = 770

 Score = 50.4 bits (119), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 1/58 (1%), Positives = 8/58 (13%)

Query: 1   VPWTATYIQAKGDPLADLYEDIAAEEKARATYQWLIDMTDDVDLQDSLKFLREREIVH 58
                    +         +                 +  +  +   +      E + 
Sbjct: 125 ADSPLLITGSINASGLVFIDSYYDNPSTIKGSINARGIFINDIIAPVVASSTNSEFMV 182


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.321    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 5,539,350
Number of extensions: 195322
Number of successful extensions: 358
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 358
Number of HSP's successfully gapped: 5
Length of query: 79
Length of database: 38,378,431
Length adjustment: 50
Effective length of query: 29
Effective length of database: 32,611,731
Effective search space: 945740199
Effective search space used: 945740199
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)