BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0513.0007.p
         (98 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CC3278 [M] COG1794 Aspartate racemase                                  91   4e-19
AGl3474 [M] COG1794 Aspartate racemase                                 86   2e-17
AGl1549 [M] COG1794 Aspartate racemase                                 81   3e-16
STM3015 [M] COG1794 Aspartate racemase                                 79   1e-15
PH1733 [M] COG1794 Aspartate racemase                                  52   3e-07

>CC3278 [M] COG1794 Aspartate racemase
          Length = 253

 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 58/80 (72%)

Query: 5   IVPDDADRVVIHDIIYYELCLGIINEHSKKKYLEIMDRLIHKGAEAVILGCTEITMLISQ 64
           + PD  DR ++H IIY EL  G + + S++ Y  ++ RL+ +GAEA+ILGCTEI +L+SQ
Sbjct: 166 LTPDADDRAIVHRIIYEELVAGRVLDASREAYRAVIARLVDRGAEAIILGCTEIMLLVSQ 225

Query: 65  EDCNIPIYDTTRLHAEAAVD 84
            D  +P++DTT LHA AAV+
Sbjct: 226 ADSPVPVFDTTTLHAMAAVE 245


>AGl3474 [M] COG1794 Aspartate racemase
          Length = 63

 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 0/80 (0%), Positives = 0/80 (0%)

Query: 5   IVPDDADRVVIHDIIYYELCLGIINEHSKKKYLEIMDRLIHKGAEAVILGCTEITMLISQ 64
                                                                       
Sbjct: 189                                                              248

Query: 65  EDCNIPIYDTTRLHAEAAVD 84
                               
Sbjct: 249                      268


>AGl1549 [M] COG1794 Aspartate racemase
          Length = 134

 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 0/80 (0%), Positives = 0/80 (0%)

Query: 5   IVPDDADRVVIHDIIYYELCLGIINEHSKKKYLEIMDRLIHKGAEAVILGCTEITMLISQ 64
                                                                       
Sbjct: 178                                                              237

Query: 65  EDCNIPIYDTTRLHAEAAVD 84
                               
Sbjct: 238                      257


>STM3015 [M] COG1794 Aspartate racemase
          Length = 235

 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 54/81 (66%)

Query: 4   SIVPDDADRVVIHDIIYYELCLGIINEHSKKKYLEIMDRLIHKGAEAVILGCTEITMLIS 63
           +IVP+  DR  I+ +I+ ELC G   + S+  YL+++++L  +GA+ VI GCTEI +L+ 
Sbjct: 146 TIVPEADDRARINQVIFDELCQGTFTDASRHYYLQVIEQLAAQGAQGVIFGCTEIGLLVP 205

Query: 64  QEDCNIPIYDTTRLHAEAAVD 84
           Q    +P++DTT +HA  AV 
Sbjct: 206 QTQSALPVFDTTAIHAADAVS 226


>PH1733 [M] COG1794 Aspartate racemase
          Length = 226

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 11/79 (13%)

Query: 5   IVPDDADRVVIHDIIYYELCLGIINEHSKKKYLEIMDRLIHK-----GAEAVILGCTEIT 59
           +VP+D ++  ++ II+ EL  G +      K  E + RLI K     G E VILGCTE+ 
Sbjct: 144 VVPNDEEKEELNRIIFEELAFGNL------KNKEWIVRLIEKYRESEGIEGVILGCTELP 197

Query: 60  MLISQEDCNIPIYDTTRLH 78
           + I Q D ++ ++D+  +H
Sbjct: 198 LAIKQGDVSVEVFDSAEIH 216


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.325    0.143    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 7,011,906
Number of extensions: 210974
Number of successful extensions: 611
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 609
Number of HSP's successfully gapped: 8
Length of query: 98
Length of database: 38,378,431
Length adjustment: 67
Effective length of query: 31
Effective length of database: 30,651,053
Effective search space: 950182643
Effective search space used: 950182643
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 109 (46.6 bits)