BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0513.0004.p (218 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc3262 [Q] COG2761 Predicted dithiol-disulfide isomerase involv... 135 6e-32 AGpA164 [L] COG0507 ATP-dependent exoDNAse (exonuclease V), alph... 80 2e-15 AGpA16 [Q] COG2761 Predicted dithiol-disulfide isomerase involve... 80 2e-15 AGpA166 [R] COG3550 Uncharacterized protein related to capsule b... 80 2e-15 AGpA160 [U] COG3505 Type IV secretory pathway, VirD4 components 80 2e-15 >AGc3262 [Q] COG2761 Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis Length = 452 Score = 135 bits (339), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 12/216 (5%), Positives = 32/216 (14%), Gaps = 11/216 (5%) Query: 8 KMKIEIWSDYVCPFCYIGKRRLESALEQFAHQNEVVIEYRSFELNPQGSMYSGKNMHQIL 67 + + + + + + Sbjct: 23 FVIDANGVPRGKWIPRERAIDVLEKGMAIPRSVYALDIWGRDVHAAGLA-EGTGDPDGFC 81 Query: 68 SEKHGMS-IEQAKEANAKLGQQAAMMGLVYNFDQMK-PTNTFDAHRLTQYAKSVGKD--K 123 G + + L Y K+ Sbjct: 82 FPVPGTLSRVTWLGRPTAQVLL---AMKNADGTGFYGDPRHVLSQVLNAYKKAGLTPVVA 138 Query: 124 ELSEKLFYSYYTEAKLISDHDTLADIAESVGMNRDETMEVL-HDPSKYANEVHSDEATAK 182 E A + G + ++ L + A+ Sbjct: 139 TELEFYLIDPVRSALDPVRPPHSREGRWHTGQTQVLSISELQDFEDV--FHDIATACRAQ 196 Query: 183 QLGITGAPFFVIDRKYAISGAQPIEIFLSALNQAAQ 218 + +Y I+ + +A Sbjct: 197 GVLADTTLRENGPGQYEINLNHVPDALQAADFAVFL 232 >AGpA164 [L] COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member Length = 435 Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 16/209 (7%), Positives = 41/209 (19%), Gaps = 5/209 (2%) Query: 9 MKIEIWSDYVCPFCYIGKRRLESALEQFAHQNEVVIEYRSFELNPQGSMYSGKNMHQILS 68 + + +S ++ + L S + L Sbjct: 53 ASLLSQQLQELRTRMYPPKSEKSLRPFLTNEVSKLTSIPDSTLKLMSSE-GRGPVPGRLE 111 Query: 69 EKHGMSIEQAKEANAKLGQQAAMMGLVYNFDQMKPT-NTFDAHRLTQYAKSVGKDKELSE 127 H + + N A+ + K Sbjct: 112 NNHRVY--TLAQINELREFFASQKPSEALRFLPRRREGEHLQVVAIANFKGGSAKTTTCV 169 Query: 128 KLFYSYYTEAKLISDHDTLADIAESVGMNRDETMEVLHDPSKYANEVHSDEATAKQLGIT 187 L + + + D + S +V + + Y + D+A + + Sbjct: 170 HLAHYLALQGYRVLALDLDPQASLSALFGAQPEFDVGANETIY-AALRYDDAERRPIRDI 228 Query: 188 GAPFFVIDRKYAISGAQPIEIFLSALNQA 216 + + +E Sbjct: 229 IRKTYFDGIDLIPGNLEVMEYEHETPRVL 257 >AGpA16 [Q] COG2761 Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis Length = 435 Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 16/209 (7%), Positives = 41/209 (19%), Gaps = 5/209 (2%) Query: 9 MKIEIWSDYVCPFCYIGKRRLESALEQFAHQNEVVIEYRSFELNPQGSMYSGKNMHQILS 68 + + +S ++ + L S + L Sbjct: 53 ASLLSQQLQELRTRMYPPKSEKSLRPFLTNEVSKLTSIPDSTLKLMSSE-GRGPVPGRLE 111 Query: 69 EKHGMSIEQAKEANAKLGQQAAMMGLVYNFDQMKPT-NTFDAHRLTQYAKSVGKDKELSE 127 H + + N A+ + K Sbjct: 112 NNHRVY--TLAQINELREFFASQKPSEALRFLPRRREGEHLQVVAIANFKGGSAKTTTCV 169 Query: 128 KLFYSYYTEAKLISDHDTLADIAESVGMNRDETMEVLHDPSKYANEVHSDEATAKQLGIT 187 L + + + D + S +V + + Y + D+A + + Sbjct: 170 HLAHYLALQGYRVLALDLDPQASLSALFGAQPEFDVGANETIY-AALRYDDAERRPIRDI 228 Query: 188 GAPFFVIDRKYAISGAQPIEIFLSALNQA 216 + + +E Sbjct: 229 IRKTYFDGIDLIPGNLEVMEYEHETPRVL 257 >AGpA166 [R] COG3550 Uncharacterized protein related to capsule biosynthesis enzymes Length = 435 Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 16/209 (7%), Positives = 41/209 (19%), Gaps = 5/209 (2%) Query: 9 MKIEIWSDYVCPFCYIGKRRLESALEQFAHQNEVVIEYRSFELNPQGSMYSGKNMHQILS 68 + + +S ++ + L S + L Sbjct: 53 ASLLSQQLQELRTRMYPPKSEKSLRPFLTNEVSKLTSIPDSTLKLMSSE-GRGPVPGRLE 111 Query: 69 EKHGMSIEQAKEANAKLGQQAAMMGLVYNFDQMKPT-NTFDAHRLTQYAKSVGKDKELSE 127 H + + N A+ + K Sbjct: 112 NNHRVY--TLAQINELREFFASQKPSEALRFLPRRREGEHLQVVAIANFKGGSAKTTTCV 169 Query: 128 KLFYSYYTEAKLISDHDTLADIAESVGMNRDETMEVLHDPSKYANEVHSDEATAKQLGIT 187 L + + + D + S +V + + Y + D+A + + Sbjct: 170 HLAHYLALQGYRVLALDLDPQASLSALFGAQPEFDVGANETIY-AALRYDDAERRPIRDI 228 Query: 188 GAPFFVIDRKYAISGAQPIEIFLSALNQA 216 + + +E Sbjct: 229 IRKTYFDGIDLIPGNLEVMEYEHETPRVL 257 >AGpA160 [U] COG3505 Type IV secretory pathway, VirD4 components Length = 435 Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 16/209 (7%), Positives = 41/209 (19%), Gaps = 5/209 (2%) Query: 9 MKIEIWSDYVCPFCYIGKRRLESALEQFAHQNEVVIEYRSFELNPQGSMYSGKNMHQILS 68 + + +S ++ + L S + L Sbjct: 53 ASLLSQQLQELRTRMYPPKSEKSLRPFLTNEVSKLTSIPDSTLKLMSSE-GRGPVPGRLE 111 Query: 69 EKHGMSIEQAKEANAKLGQQAAMMGLVYNFDQMKPT-NTFDAHRLTQYAKSVGKDKELSE 127 H + + N A+ + K Sbjct: 112 NNHRVY--TLAQINELREFFASQKPSEALRFLPRRREGEHLQVVAIANFKGGSAKTTTCV 169 Query: 128 KLFYSYYTEAKLISDHDTLADIAESVGMNRDETMEVLHDPSKYANEVHSDEATAKQLGIT 187 L + + + D + S +V + + Y + D+A + + Sbjct: 170 HLAHYLALQGYRVLALDLDPQASLSALFGAQPEFDVGANETIY-AALRYDDAERRPIRDI 228 Query: 188 GAPFFVIDRKYAISGAQPIEIFLSALNQA 216 + + +E Sbjct: 229 IRKTYFDGIDLIPGNLEVMEYEHETPRVL 257 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.316 0.130 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 14,903,026 Number of extensions: 554461 Number of successful extensions: 1149 Number of sequences better than 1.0e-05: 7 Number of HSP's gapped: 1137 Number of HSP's successfully gapped: 7 Length of query: 218 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 116 Effective length of database: 26,614,363 Effective search space: 3087266108 Effective search space used: 3087266108 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 113 (48.1 bits)