BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0511.0003.p (293 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPy1286 [V] COG1131 ABC-type multidrug transport system, ATPase ... 211 9e-55 CAC0266 [V] COG1131 ABC-type multidrug transport system, ATPase ... 206 2e-53 HP1220 [V] COG1131 ABC-type multidrug transport system, ATPase c... 192 7e-49 jhp1141 [V] COG1131 ABC-type multidrug transport system, ATPase ... 187 2e-47 BS_yhcG [V] COG1131 ABC-type multidrug transport system, ATPase ... 150 2e-36 >SPy1286 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 232 Score = 211 bits (538), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 97/228 (42%), Positives = 161/228 (70%) Query: 63 MENVLECSNLTKRYGKKVALDNLNLTLPKGRIVGLLGPNGAGKTTLMKLIVSLLRDYRGS 122 M ++L+ +++K Y +K A+D+L +T+P G+I+GLLGPNG+GKTTL+KLI LL+ +G Sbjct: 1 MAHLLQLHHVSKSYREKKAIDDLTITIPNGKIIGLLGPNGSGKTTLIKLINGLLQPNKGE 60 Query: 123 ITVCGRRPGLDTKKIVSYLPDREFLYPWMTIEECIAFFRNSFADFQLDMAYAMIEELGLD 182 I + G RP ++TKKI+SYLPD +L M I++ + FF + ++DF A +++ +L LD Sbjct: 61 IVIDGYRPCVETKKIISYLPDTTYLNENMRIKDMLEFFSDFYSDFDKSKATSLLRDLELD 120 Query: 183 PNEKVKNLSKGMQERVSISLVFARKAKLYVLDEPLAAVDPSTRDKIMRIILEHFDPESSI 242 P ++ K LSKG +E+V + LV +RKA+LYVLDEP+ VDP+ RD I++ I+ + +S+ Sbjct: 121 PEDRFKTLSKGNKEKVQLILVMSRKARLYVLDEPIGGVDPAARDYILKTIINSYCENASV 180 Query: 243 LLSTHLIHDVESLFTDIAVVNEGRVQLYGGIGELQRDYGMPIEEIFKQ 290 ++STHLI D+E + ++ + +GR+ L G +L+++Y I+ +F++ Sbjct: 181 IISTHLISDIEPILDEVIFLKQGRLFLSGNADDLRQEYQQSIDSLFRE 228 >CAC0266 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 234 Score = 206 bits (525), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 101/228 (44%), Positives = 161/228 (70%) Query: 64 ENVLECSNLTKRYGKKVALDNLNLTLPKGRIVGLLGPNGAGKTTLMKLIVSLLRDYRGSI 123 E +L+ +NL K+Y K ALDN NL L G+++GLLGPNG+GK+T +K++ +L+ G I Sbjct: 3 EYLLKVNNLNKKYLNKKALDNFNLELKTGKVLGLLGPNGSGKSTFLKILSGILKKSSGEI 62 Query: 124 TVCGRRPGLDTKKIVSYLPDREFLYPWMTIEECIAFFRNSFADFQLDMAYAMIEELGLDP 183 + G+ P + T+ IVSYLPD +LY WM I++ + FF++ + DF A +++ + LD Sbjct: 63 LIDGQEPSIYTRSIVSYLPDIGYLYKWMKIKDALEFFKDFYDDFDYKKAMELLDFMKLDK 122 Query: 184 NEKVKNLSKGMQERVSISLVFARKAKLYVLDEPLAAVDPSTRDKIMRIILEHFDPESSIL 243 + KV LSKGM E++ ++LV +RKAKLY+LDEPL VDP+TR+KI+ I+++F +SS++ Sbjct: 123 DSKVTALSKGMAEKLQLTLVLSRKAKLYILDEPLGGVDPTTREKILDTIIDNFSEDSSMI 182 Query: 244 LSTHLIHDVESLFTDIAVVNEGRVQLYGGIGELQRDYGMPIEEIFKQL 291 ++THL+ DVE LF D+A ++EG+ L G EL+ + G I+ +++++ Sbjct: 183 ITTHLVSDVERLFDDVAFISEGKNVLSGNADELRNEKGTSIDGLYREI 230 >HP1220 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 228 Score = 192 bits (487), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 92/225 (40%), Positives = 147/225 (65%), Gaps = 1/225 (0%) Query: 66 VLECSNLTKRYGKKVALDNLNLTLPKGRIVGLLGPNGAGKTTLMKLIVSLLRDYRGSITV 125 ++E NLTK YG ALDN+NL LPK + +GLLGPNGAGKTTL+K++ L +Y+G + + Sbjct: 2 LVEIENLTKTYGSLKALDNINLKLPKQQFIGLLGPNGAGKTTLLKILAGLNLNYQGEVKI 61 Query: 126 CGRRPGLDTKKIVSYLPDREFLYPWMTIEECIAFFRNSFADFQLDMAYAMIEELGLDPNE 185 ++ G++TKK V++L D +FL P +T + IAF+++ F+DF A +++ + Sbjct: 62 LNQKIGIETKKSVAFLSDGDFLDPKLTPLKAIAFYKDFFSDFDSSKALDLLKRFSVPLKR 121 Query: 186 KVKNLSKGMQERVSISLVFARKAKLYVLDEPLAAVDPSTRDKIMRIILEHFDPESSILLS 245 + K LSKGM+E++ + L +R A LY+ DEP+A +DP R++I +I + F +S+L+S Sbjct: 122 EFKALSKGMREKLQLILTLSRNASLYLFDEPVAGIDPIAREEIFELIAKEFSQNASLLVS 181 Query: 246 THLIHDVESLFTDIAVVNEGRVQLYGGIGELQRDYGMPIEEIFKQ 290 THL+ DVE + E +V +GG+GEL++ Y +E +K+ Sbjct: 182 THLVVDVEKYLDSAIFLKEAKVVAFGGVGELKKGYS-SLEAAYKE 225 >jhp1141 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 228 Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 90/225 (40%), Positives = 146/225 (64%), Gaps = 1/225 (0%) Query: 66 VLECSNLTKRYGKKVALDNLNLTLPKGRIVGLLGPNGAGKTTLMKLIVSLLRDYRGSITV 125 ++E NLTK YG ALDN++L LPK + +GLLGPNGAGKTTL+K++ L +Y+G + + Sbjct: 2 LVEIENLTKTYGSLKALDNISLKLPKQQFIGLLGPNGAGKTTLLKILAGLNLNYQGEVKI 61 Query: 126 CGRRPGLDTKKIVSYLPDREFLYPWMTIEECIAFFRNSFADFQLDMAYAMIEELGLDPNE 185 ++ G++TKK V++L D +FL P +T + IAF+++ F+DF A +++ + Sbjct: 62 LNQKIGIETKKSVAFLSDGDFLDPKLTPLKAIAFYKDFFSDFDESKALNLLKRFSVPLKR 121 Query: 186 KVKNLSKGMQERVSISLVFARKAKLYVLDEPLAAVDPSTRDKIMRIILEHFDPESSILLS 245 + K LSKGM+E++ + L +R A LY+ DEP+A +DP R++I +I + F +S+L+S Sbjct: 122 EFKALSKGMREKLQLILTLSRNASLYLFDEPVAGIDPIAREEIFELIAKEFSQNASLLVS 181 Query: 246 THLIHDVESLFTDIAVVNEGRVQLYGGIGELQRDYGMPIEEIFKQ 290 THL+ DVE + E +V +G +GEL++ Y +E +K+ Sbjct: 182 THLVVDVEKYLDSAIFLKEAKVVAFGDVGELKKGYS-SLEAAYKE 225 >BS_yhcG [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 375 Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 12/224 (5%), Positives = 35/224 (15%), Gaps = 1/224 (0%) Query: 67 LECSNLTKRYGKKVALDNLNLTLPKGRIVGLLGPNGAGKTTLMKLIVSLLRDYRGSITVC 126 T Y + + + V + + + + Sbjct: 3 SLSEGTTAGYQQIHDGIIHLVDSARTETVRSVNALMTATYQEIGRRIVEFEQGGEARAAY 62 Query: 127 GRRPGLDTKKIVSYLPDREFLYPWMTIEECIAFFRNSFADFQLDMAYAMIEELGLDPNEK 186 G + K + R F + F Q + P+ + Sbjct: 63 GAQLIKRLSKDLCLRYKRGFSAKNLRQMRLFYLFFQHVEIHQTMSGELTPLGIPQTPSAE 122 Query: 187 VKNLSKGMQERVSISLVFARKAKLYVLDEPLAAVDPSTRDKIMRIILEHFDPESSI-LLS 245 + + + + A ++ + Sbjct: 123 FPSAKIWQTLSAKSFPLPRSTYVRLLSVKNADARSFYEKETLRCGWSVRQLERQIATQFY 182 Query: 246 THLIHDVESLFTDIAVVNEGRVQLYGGIGELQRDYGMPIEEIFK 289 + + L + Sbjct: 183 ERTLLSHDKSAMLQQHAPAETHILPQQAIRDPFVLEFLELKDEY 226 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.138 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,162,304 Number of extensions: 860318 Number of successful extensions: 18879 Number of sequences better than 1.0e-05: 1767 Number of HSP's gapped: 17199 Number of HSP's successfully gapped: 1859 Length of query: 293 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 187 Effective length of database: 26,153,027 Effective search space: 4890616049 Effective search space used: 4890616049 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 115 (48.9 bits)