BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0510.0010.p
         (134 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_yngA [S] COG2246 Predicted membrane protein                         81   5e-16

>BS_yngA [S] COG2246 Predicted membrane protein
          Length = 148

 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 66/120 (55%), Gaps = 6/120 (5%)

Query: 15  KFNAVGVLNTLIDFAIFTLLHSLGMMNAPAQIISYSAGTANSFIWNKKVTFRDRDRGSKD 74
           +F  VGV NTLIDF +F LL +  +   PAQI SY+AG  NS++WN+  TF  + +    
Sbjct: 24  RFCTVGVGNTLIDFGVFFLLTACHVSYLPAQICSYTAGIVNSYVWNRNWTFCVKRKA--- 80

Query: 75  SFDRMQLVRFIVLNLVVLGISVLLMHLLTGRFGIQXXXXXXXXXXXXXXINFFGSRKWVF 134
             D  ++VRF+++N+   GI+ LL++L     G                +NF G+R WVF
Sbjct: 81  --DGKEIVRFLMINIAASGITFLLLYLFQ-NCGCSLLVSKLAATIGGMMMNFIGNRIWVF 137


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.332    0.144    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 8,245,624
Number of extensions: 268962
Number of successful extensions: 446
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 446
Number of HSP's successfully gapped: 1
Length of query: 134
Length of database: 38,378,431
Length adjustment: 95
Effective length of query: 39
Effective length of database: 27,421,701
Effective search space: 1069446339
Effective search space used: 1069446339
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 110 (47.0 bits)