BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0510.0009.p (329 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC0194 [M] COG0463 Glycosyltransferases involved in cell wall b... 377 e-104 sll0501 [M] COG0463 Glycosyltransferases involved in cell wall b... 309 5e-84 mll5672 [M] COG0463 Glycosyltransferases involved in cell wall b... 284 2e-76 CC2889 [M] COG0463 Glycosyltransferases involved in cell wall bi... 273 2e-73 lin2695 [M] COG0463 Glycosyltransferases involved in cell wall b... 271 1e-72 >CAC0194 [M] COG0463 Glycosyltransferases involved in cell wall biogenesis Length = 326 Score = 377 bits (967), Expect = e-104, Method: Compositional matrix adjust. Identities = 172/305 (56%), Positives = 231/305 (75%) Query: 5 YSVIVPMFNEEEVIQHTYERLKKVMDGCGDSYELVFVNDGSRDRTAEIMREVSSRDEHVK 64 YS++VP++NEE VI Y RLKK+MD ++YE+++VNDGS+D T + ++ +D+ +K Sbjct: 7 YSIVVPLYNEELVIDENYMRLKKIMDSLKENYEIMYVNDGSKDSTMNKVEKICEKDKRIK 66 Query: 65 LVDFSRNFGHQVAITAGMDYAEGEAVVVIDADLQDPPEVILQMIAKWKEGYEVVYAKRLK 124 LV+FSRNFGHQ AI+AGM+ + G+A++VIDADLQDPPEVI QMI KWK+GY+VVY KRLK Sbjct: 67 LVNFSRNFGHQCAISAGMELSAGDAIIVIDADLQDPPEVIPQMIDKWKDGYDVVYGKRLK 126 Query: 125 RQGETLFKKATAKMFYRLLSSMTSVEIPTDTGDFRLIDRKVCDVLRGLKEKNRYVRGLVS 184 R+GE+ KK TAK+FYRLL S+T+++IP DTGDFRLIDRKVCD L L E+NRYVRGLVS Sbjct: 127 RKGESFLKKFTAKIFYRLLRSITNIDIPVDTGDFRLIDRKVCDTLSSLPERNRYVRGLVS 186 Query: 185 WVGFRQTMVEYVREERFAGETKYPLKKMIRFALDGITSFSHKPLKIASYIGXXXXXXXXX 244 WVGF+QT VE+ R+ERFAG +KYPLKKM++ A DGITSFS+KPL ++Y+G Sbjct: 187 WVGFKQTFVEFTRQERFAGASKYPLKKMLKLAFDGITSFSYKPLVASTYLGGLMFLLGLL 246 Query: 245 XXXXXXXQKVFTSWTVPGWASIVGVNLLFNGIVLMLLGVIGEYIGRIYDESKDRPLYIVR 304 + +++ T+ I+ +NL G++ ++LG++G+YIGRI DESK RP YI+ Sbjct: 247 AFIYVTAKNLYSHKTILTLGLILAINLCMFGLIFIILGILGQYIGRISDESKARPNYIIA 306 Query: 305 ETRGY 309 T Y Sbjct: 307 STINY 311 >sll0501 [M] COG0463 Glycosyltransferases involved in cell wall biogenesis Length = 318 Score = 309 bits (791), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 141/303 (46%), Positives = 213/303 (70%) Query: 6 SVIVPMFNEEEVIQHTYERLKKVMDGCGDSYELVFVNDGSRDRTAEIMREVSSRDEHVKL 65 S+++PM+NEE+ ++H + RL +V+ +YE++ VNDGS+D+T + + + + +K+ Sbjct: 6 SIVIPMYNEEDNLEHLFARLLEVLTPLKITYEIICVNDGSKDKTLKQLIDCYQSNRQIKI 65 Query: 66 VDFSRNFGHQVAITAGMDYAEGEAVVVIDADLQDPPEVILQMIAKWKEGYEVVYAKRLKR 125 V+ SRNFG ++A++AG+DYA+G AV+ IDADLQDPPE+I +++ KW+EGY++VYA R R Sbjct: 66 VNLSRNFGKEIALSAGIDYAQGNAVIPIDADLQDPPELIHELVDKWREGYDIVYATRRSR 125 Query: 126 QGETLFKKATAKMFYRLLSSMTSVEIPTDTGDFRLIDRKVCDVLRGLKEKNRYVRGLVSW 185 QGET K+ TAKMFY+++ MT ++IP +TGDFRL+DRKV + ++ L E+ R+++GL +W Sbjct: 126 QGETWVKQFTAKMFYKVIGRMTEIKIPPNTGDFRLMDRKVVNAIKQLPERTRFMKGLFAW 185 Query: 186 VGFRQTMVEYVREERFAGETKYPLKKMIRFALDGITSFSHKPLKIASYIGXXXXXXXXXX 245 VG+RQT V + RE RF G+TK+ K+ FALDGI SFS PLK+ +Y+G Sbjct: 186 VGYRQTFVLFDREPRFQGQTKWNYWKLWNFALDGIFSFSLLPLKVWTYLGSIISLLSLAY 245 Query: 246 XXXXXXQKVFTSWTVPGWASIVGVNLLFNGIVLMLLGVIGEYIGRIYDESKDRPLYIVRE 305 + + VPG+AS++ L G+ L+ LGVIGEY+GR+Y+E K RPLY+V + Sbjct: 246 ASFLILKTITLGVDVPGYASLMVAILFLGGVQLISLGVIGEYLGRVYEEVKARPLYLVSD 305 Query: 306 TRG 308 G Sbjct: 306 LWG 308 >mll5672 [M] COG0463 Glycosyltransferases involved in cell wall biogenesis Length = 301 Score = 284 bits (726), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 0/306 (0%), Positives = 0/306 (0%), Gaps = 9/306 (2%) Query: 4 RYSVIVPMFNEEEVIQHTYERLKKVMDGCGDSYELVFVNDGSRDRTAEIMREVSSRDEHV 63 + + + +V ++ + + +E Sbjct: 13 IVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKR 72 Query: 64 KLVDFSRNFGHQVAITAGMDYAEGEAVVVIDADLQDPPEVILQMIAKWKEGYEVVYAKRL 123 + + E D ++ +V + Sbjct: 73 AINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQEK 132 Query: 124 KRQGETLFKKATAKMFYRLLSSMTSVEIPTDTGDFRLIDRKVCDVLRGLKEKNRYVRGLV 183 L A+ F ++ + DT + ++ Sbjct: 133 ADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITDRSQRF 192 Query: 184 SWVGFRQTMVEYVREERFAGETKYPLKKMIRFALDGITSFSHKPLKIASYIGXXXXXXXX 243 + + +++ + G ++ Sbjct: 193 MASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVEREGQKKMVIGNKGA 252 Query: 244 XXXXXXXXQKVFTSWT----VPGWASIVGVNLLFNGIVLMLLGVIGEYIGRIYDESKDRP 299 + Sbjct: 253 KIKTI-----GIEARKDMQE 307 Query: 300 LYIVRE 305 Sbjct: 308 313 >CC2889 [M] COG0463 Glycosyltransferases involved in cell wall biogenesis Length = 330 Score = 273 bits (699), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 129/304 (42%), Positives = 196/304 (64%) Query: 6 SVIVPMFNEEEVIQHTYERLKKVMDGCGDSYELVFVNDGSRDRTAEIMREVSSRDEHVKL 65 S++ P FNE+EV+ ++R+ M G +YE+V VNDGSRD T ++ RD +K+ Sbjct: 25 SIVAPCFNEQEVLDLFFDRIDAEMARLGVAYEVVCVNDGSRDHTLTVLLRRHQRDPRIKV 84 Query: 66 VDFSRNFGHQVAITAGMDYAEGEAVVVIDADLQDPPEVILQMIAKWKEGYEVVYAKRLKR 125 ++ +RNFG + A++AG+D A G+ +V ID DLQDPPE+I Q + W+ G +V Y R+ R Sbjct: 85 INLARNFGKETALSAGLDAATGDMIVPIDCDLQDPPELIGQFLEAWEAGADVAYGVRVDR 144 Query: 126 QGETLFKKATAKMFYRLLSSMTSVEIPTDTGDFRLIDRKVCDVLRGLKEKNRYVRGLVSW 185 + L K+ATA+ FYR + ++ V++P + GD+RL+DR+V +VL+ L E+NR+++GL +W Sbjct: 145 TSDGLLKRATAQGFYRAFNKLSDVDLPYNAGDYRLMDRRVVEVLKQLPERNRFMKGLFAW 204 Query: 186 VGFRQTMVEYVREERFAGETKYPLKKMIRFALDGITSFSHKPLKIASYIGXXXXXXXXXX 245 VGF Q V YVR ER AG T + K+ FALDGITSFS P++I SY+G Sbjct: 205 VGFNQVAVPYVRPERAAGTTSFRYWKLWNFALDGITSFSSVPIRIWSYVGLIAGVLACGV 264 Query: 246 XXXXXXQKVFTSWTVPGWASIVGVNLLFNGIVLMLLGVIGEYIGRIYDESKDRPLYIVRE 305 + + VPG+ S++ V L+ G+ ++ +G +GEY+ RIY E K+RPLY+V + Sbjct: 265 AGMIVVRTLLFGRDVPGYPSLMVVILMGFGLQMLAIGSLGEYVARIYQEVKNRPLYVVMD 324 Query: 306 TRGY 309 G+ Sbjct: 325 RYGF 328 >lin2695 [M] COG0463 Glycosyltransferases involved in cell wall biogenesis Length = 301 Score = 271 bits (692), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 0/305 (0%), Positives = 0/305 (0%), Gaps = 2/305 (0%) Query: 6 SVIVPMFNEEEVIQHTYERLKKVMDGCGDSY--ELVFVNDGSRDRTAEIMREVSSRDEHV 63 L + G S + + Sbjct: 5 KSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTP 64 Query: 64 KLVDFSRNFGHQVAITAGMDYAEGEAVVVIDADLQDPPEVILQMIAKWKEGYEVVYAKRL 123 L + +++ A +V+ + ++ K +EG V Sbjct: 65 GLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVN 124 Query: 124 KRQGETLFKKATAKMFYRLLSSMTSVEIPTDTGDFRLIDRKVCDVLRGLKEKNRYVRGLV 183 K + + +P +D V + L E + Sbjct: 125 KVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDY 184 Query: 184 SWVGFRQTMVEYVREERFAGETKYPLKKMIRFALDGITSFSHKPLKIASYIGXXXXXXXX 243 ++ M + E+ L + ++ S I I Sbjct: 185 ITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVEREGQKK 244 Query: 244 XXXXXXXXQKVFTSWTVPGWASIVGVNLLFNGIVLMLLGVIGEYIGRIYDESKDRPLYIV 303 Sbjct: 245 304 Query: 304 RETRG 308 Sbjct: 305 309 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.139 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 23,871,364 Number of extensions: 982053 Number of successful extensions: 2198 Number of sequences better than 1.0e-05: 80 Number of HSP's gapped: 2177 Number of HSP's successfully gapped: 80 Length of query: 329 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 222 Effective length of database: 26,037,693 Effective search space: 5780367846 Effective search space used: 5780367846 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 116 (49.3 bits)