BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0510.0003.p
         (186 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAP0108 [K] COG1695 Predicted transcriptional regulators               53   3e-07
NMA2093 [R] COG0637 Predicted phosphatase/phosphohexomutase            49   4e-06

>CAP0108 [K] COG1695 Predicted transcriptional regulators
          Length = 180

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 2/95 (2%)

Query: 20  LILGLLKDCGQSSAYELLNIFKERNYRYLVHVTKGSLYYNLQKLANEGFVRLVEVVSVNN 79
           +ILG L+   + SAYE++  F + N    + ++  S+Y N+ KL + G++    +V    
Sbjct: 12  IILGYLQH-KEKSAYEMVKDFDKWNLTKWLKISNPSIYKNIIKLCDNGYLN-SRIVKEGE 69

Query: 80  YPEQHIYEITEQGNDYFDALMAKHSVQTDDITLAF 114
            PE+ +Y + E+GN YF+ LM + S    ++ L F
Sbjct: 70  MPEKTLYSMNEKGNAYFNELMEESSKNIGNVYLEF 104


>NMA2093 [R] COG0637 Predicted phosphatase/phosphohexomutase
          Length = 346

 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 13/176 (7%), Positives = 29/176 (16%), Gaps = 21/176 (11%)

Query: 20  LILGLLKDCGQSSAYELLNIFKERNYRYLVHVTKGSLYYNLQKLANEGFVRLVEVVSVNN 79
               L                      +       +   NL  +A    V      +   
Sbjct: 7   PHSSLEVS-TLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVP-PRPETQGL 64

Query: 80  YPEQHIYEITEQGNDYFDALMAKHSVQTDDITLAFYMTTLFAHQYDPEQFKKAVSVQIEK 139
                   + + G+     + +K S  + +             Q    +  +       K
Sbjct: 65  TETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIR-----PDQALDRKNIREALHDSLK 119

Query: 140 TQKKIEEIDFVLNSKKDIIYDTA---------KSMMKNVRAHHELNLKWFHELLEQ 186
             +        L+  +                              L    E    
Sbjct: 120 RLQT-----DYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRA 170


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.135    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 12,588,026
Number of extensions: 512926
Number of successful extensions: 1048
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1048
Number of HSP's successfully gapped: 2
Length of query: 186
Length of database: 38,378,431
Length adjustment: 100
Effective length of query: 86
Effective length of database: 26,845,031
Effective search space: 2308672666
Effective search space used: 2308672666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)