BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0509.0008.p
         (401 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YPO1292 [G] COG0120 Ribose 5-phosphate isomerase                       95   2e-19
L00457 [L] COG2826 Transposase and inactivated derivatives, IS30...    94   4e-19
NMA1683 [O] COG0542 ATPases with chaperone activity, ATP-binding...    82   2e-15
YPO0915 [G] COG0120 Ribose 5-phosphate isomerase                       72   1e-12

>YPO1292 [G] COG0120 Ribose 5-phosphate isomerase
          Length = 236

 Score = 95.1 bits (235), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/122 (40%), Positives = 76/122 (62%), Gaps = 1/122 (0%)

Query: 9   NVKQLAAEKAV-EYVVDGMKVGLGTGSTAYWAIRKLGERVQEGLKITAVATSVASEEQAR 67
           + K+ AA + + ++V DGM +GLG+G+T+++ +R+LG+ V +GL++T   TS A+ E AR
Sbjct: 7   DAKRAAARRVIQDFVFDGMTLGLGSGTTSHFFVRELGQHVAKGLQLTCTTTSRATSEVAR 66

Query: 68  ELGIPLVSFXXXXXXXXXXXXXXELNHDLELIKGGGGALLREKIVARGSKRMIVVADESK 127
           ++GI L                 E++    +IKGGG  LL EKI+A  SKRMI + DE+K
Sbjct: 67  DVGIELSDPNEMNEIDLTIDGPDEIDRRFNMIKGGGACLLWEKIIAHASKRMICICDETK 126

Query: 128 AV 129
            V
Sbjct: 127 IV 128


>L00457 [L] COG2826 Transposase and inactivated derivatives, IS30 family
          Length = 224

 Score = 94.0 bits (232), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/120 (48%), Positives = 71/120 (59%), Gaps = 1/120 (0%)

Query: 9   NVKQLAAEKAVEYVVDGMKVGLGTGSTAYWAIRKLGERV-QEGLKITAVATSVASEEQAR 67
           N+K+    KA E+V  GM VGLGTGSTA + + +LG R+ +E L+IT V TS  +  QAR
Sbjct: 3   NLKKQVGIKAAEFVKSGMVVGLGTGSTAAYFVEELGRRIAEEQLEITGVTTSNVTSSQAR 62

Query: 68  ELGIPLVSFXXXXXXXXXXXXXXELNHDLELIKGGGGALLREKIVARGSKRMIVVADESK 127
            LGIPL S               E++  L  IKGGG ALL EKIVA  SK  I + DESK
Sbjct: 63  ALGIPLASIDEVDYVDLTVDGADEIDSSLNGIKGGGAALLMEKIVATYSKDYIWIVDESK 122


>NMA1683 [O] COG0542 ATPases with chaperone activity, ATP-binding subunit
          Length = 234

 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/118 (44%), Positives = 67/118 (56%), Gaps = 1/118 (0%)

Query: 11  KQLAAEKAVEYVVDGMKVGLGTGSTAYWAIRKLGERV-QEGLKITAVATSVASEEQAREL 69
           K+ A   A   V  GM VGLGTGST  + I++LG RV +EGL I  V TS  SE  A E 
Sbjct: 13  KRAAGIAAAGLVSSGMLVGLGTGSTVAYTIKELGRRVREEGLDILGVVTSYQSEMLAIEA 72

Query: 70  GIPLVSFXXXXXXXXXXXXXXELNHDLELIKGGGGALLREKIVARGSKRMIVVADESK 127
           GI L +               +++ +L  IKGGG A  REKIV+  ++R +VVADESK
Sbjct: 73  GIRLTTLAQHPELDLAIDGADQIDSELRAIKGGGAAHTREKIVSVSARRFVVVADESK 130


>YPO0915 [G] COG0120 Ribose 5-phosphate isomerase
          Length = 218

 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 65/115 (56%), Gaps = 6/115 (5%)

Query: 18  AVEYVVDGMKVGLGTGSTAYWAIRKLG--ERVQEGLKITAVATSVASEEQARELGIPLVS 75
           A++YV  G  VG+GTGSTA   I  LG  +   EG    AV++S AS  + +  GIP+  
Sbjct: 14  ALDYVKPGTIVGVGTGSTAAHFIDALGSIKHQIEG----AVSSSDASTAKLKSYGIPVFD 69

Query: 76  FXXXXXXXXXXXXXXELNHDLELIKGGGGALLREKIVARGSKRMIVVADESKAVG 130
                          E+N  +++IKGGG AL REKI+A  +++ I +ADESK VG
Sbjct: 70  CNDVDVLDIYVDGADEINGQMQMIKGGGAALTREKIIAAIARKFICIADESKQVG 124


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.322    0.138    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 25,388,805
Number of extensions: 904729
Number of successful extensions: 2299
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2294
Number of HSP's successfully gapped: 4
Length of query: 401
Length of database: 38,378,431
Length adjustment: 109
Effective length of query: 292
Effective length of database: 25,807,025
Effective search space: 7535651300
Effective search space used: 7535651300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 117 (49.7 bits)