BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0509.0003.p (215 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin0361 [G] COG0176 Transaldolase 300 1e-81 SPy1678 [G] COG0176 Transaldolase 248 4e-66 aq_1194 [S] COG4636 Uncharacterized protein conserved in cyanoba... 244 1e-64 aq_1195 [C] COG0674 Pyruvate:ferredoxin oxidoreductase and relat... 244 1e-64 aq_1192a [C] COG1144 Pyruvate:ferredoxin oxidoreductase and rela... 244 1e-64 >lin0361 [G] COG0176 Transaldolase Length = 218 Score = 300 bits (768), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 145/214 (67%), Positives = 176/214 (82%) Query: 1 MKFFLDTGNIEEIKRITRLGLVDGVTTNPSLIAKEGRLFKDVIKEIVAIVPGPVSAEVIG 60 MKFFLDT ++ EIKRI+ LGLVDGVTTNP++IAKEGR F++VIKEI +IV GPVSAEVIG Sbjct: 1 MKFFLDTASVSEIKRISELGLVDGVTTNPTIIAKEGRPFEEVIKEICSIVDGPVSAEVIG 60 Query: 61 LKAEEMLKEAYEIAEWAPNVVIKLPMTEDGLEACYELTKKGIKTNVTLIFSXXXXXXXXX 120 L+A++M++EA +A+WAPNVV+K+PMTE+GL+A + LT +GIKTNVTLIF+ Sbjct: 61 LEADKMVEEARILAKWAPNVVVKIPMTEEGLKAVHTLTAEGIKTNVTLIFTVSQGLMAAK 120 Query: 121 XXXTYISPFVGRLDDIGVDGMKLISDLKTILTNYGLQSEIIAASIRNIAHVEQAAIAGAH 180 TYISPF+GRLDDIG DGM LI +LK +L NYGL++EII+ASIR+I H+E+AA AGAH Sbjct: 121 AGATYISPFLGRLDDIGTDGMILIKNLKKVLDNYGLKAEIISASIRHIGHLEEAAEAGAH 180 Query: 181 IATIPGSLLPSLWKHPLTDNGIERFLKDWEKVPQ 214 IATIPGSL P LW HPLTD GIE FLKDWE Q Sbjct: 181 IATIPGSLFPKLWSHPLTDKGIEGFLKDWEAFSQ 214 >SPy1678 [G] COG0176 Transaldolase Length = 214 Score = 248 bits (634), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 122/209 (58%), Positives = 153/209 (73%) Query: 1 MKFFLDTGNIEEIKRITRLGLVDGVTTNPSLIAKEGRLFKDVIKEIVAIVPGPVSAEVIG 60 MKFFLDT N+ IK I LG+VDGVTTNP++I++EGR F+ VIKEI IV GP+SAEV G Sbjct: 1 MKFFLDTANVAAIKAINELGVVDGVTTNPTIISREGRDFETVIKEICDIVDGPISAEVTG 60 Query: 61 LKAEEMLKEAYEIAEWAPNVVIKLPMTEDGLEACYELTKKGIKTNVTLIFSXXXXXXXXX 120 L A+ M++EA IA+W NVV+K+PMT +GL+A L+K+GIKTNVTLIF+ Sbjct: 61 LTADAMVEEARSIAKWHDNVVVKIPMTTEGLKATNILSKEGIKTNVTLIFTVSQGLMAMK 120 Query: 121 XXXTYISPFVGRLDDIGVDGMKLISDLKTILTNYGLQSEIIAASIRNIAHVEQAAIAGAH 180 TYISPF+GRL+DIG D +LISDL+ I+ Y Q+EIIAASIR AHVE A GAH Sbjct: 121 AGATYISPFIGRLEDIGTDAYQLISDLREIIDLYDFQAEIIAASIRTTAHVEAVAKLGAH 180 Query: 181 IATIPGSLLPSLWKHPLTDNGIERFLKDW 209 IATIP L + +HPLT NG++ F++DW Sbjct: 181 IATIPDPLFAKMTQHPLTTNGLKTFMEDW 209 >aq_1194 [S] COG4636 Uncharacterized protein conserved in cyanobacteria Length = 217 Score = 244 bits (622), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 118/214 (55%), Positives = 156/214 (72%) Query: 1 MKFFLDTGNIEEIKRITRLGLVDGVTTNPSLIAKEGRLFKDVIKEIVAIVPGPVSAEVIG 60 MKFFLDT N+EEIK+ G++DGVTTNP+LI+K GR FK+V+KEI+ +V GPVS E + Sbjct: 1 MKFFLDTANVEEIKKAMEWGILDGVTTNPTLISKTGRPFKEVVKEILELVDGPVSLETVS 60 Query: 61 LKAEEMLKEAYEIAEWAPNVVIKLPMTEDGLEACYELTKKGIKTNVTLIFSXXXXXXXXX 120 L AE M++E +AE NVV+K+PMT +GL+A L +GI TNVTL+FS Sbjct: 61 LDAEGMIREGRMLAELGENVVVKIPMTPEGLKAVIALESEGIPTNVTLVFSPTQALLAAK 120 Query: 121 XXXTYISPFVGRLDDIGVDGMKLISDLKTILTNYGLQSEIIAASIRNIAHVEQAAIAGAH 180 +Y+SPFVGRLDDI +GMKLI ++KTI +NY +EII AS+R+ HV ++A+ GA Sbjct: 121 AGASYVSPFVGRLDDISGEGMKLIEEIKTIFSNYEFDTEIIVASVRHPMHVLESALIGAD 180 Query: 181 IATIPGSLLPSLWKHPLTDNGIERFLKDWEKVPQ 214 I T+P ++ L+KHPLTD G+ERFLKDWEKVP+ Sbjct: 181 ICTMPFKVMEQLFKHPLTDIGLERFLKDWEKVPE 214 >aq_1195 [C] COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit Length = 346 Score = 244 bits (622), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 10/214 (4%), Positives = 40/214 (18%) Query: 1 MKFFLDTGNIEEIKRITRLGLVDGVTTNPSLIAKEGRLFKDVIKEIVAIVPGPVSAEVIG 60 M++ + E+ + + G + + + ++ + Sbjct: 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPE 60 Query: 61 LKAEEMLKEAYEIAEWAPNVVIKLPMTEDGLEACYELTKKGIKTNVTLIFSXXXXXXXXX 120 + +A+ + + G + + + Sbjct: 61 TQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKR 120 Query: 121 XXXTYISPFVGRLDDIGVDGMKLISDLKTILTNYGLQSEIIAASIRNIAHVEQAAIAGAH 180 Y+ + + + T + + A + I ++ Sbjct: 121 LQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSN 180 Query: 181 IATIPGSLLPSLWKHPLTDNGIERFLKDWEKVPQ 214 L + Sbjct: 181 ETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRS 214 >aq_1192a [C] COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit Length = 346 Score = 244 bits (622), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 10/214 (4%), Positives = 40/214 (18%) Query: 1 MKFFLDTGNIEEIKRITRLGLVDGVTTNPSLIAKEGRLFKDVIKEIVAIVPGPVSAEVIG 60 M++ + E+ + + G + + + ++ + Sbjct: 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPE 60 Query: 61 LKAEEMLKEAYEIAEWAPNVVIKLPMTEDGLEACYELTKKGIKTNVTLIFSXXXXXXXXX 120 + +A+ + + G + + + Sbjct: 61 TQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKR 120 Query: 121 XXXTYISPFVGRLDDIGVDGMKLISDLKTILTNYGLQSEIIAASIRNIAHVEQAAIAGAH 180 Y+ + + + T + + A + I ++ Sbjct: 121 LQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSN 180 Query: 181 IATIPGSLLPSLWKHPLTDNGIERFLKDWEKVPQ 214 L + Sbjct: 181 ETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRS 214 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.138 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 15,447,915 Number of extensions: 572389 Number of successful extensions: 2502 Number of sequences better than 1.0e-05: 37 Number of HSP's gapped: 2483 Number of HSP's successfully gapped: 37 Length of query: 215 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 113 Effective length of database: 26,614,363 Effective search space: 3007423019 Effective search space used: 3007423019 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 113 (48.1 bits)