BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0509.0002.p
         (201 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMc00562 [K] COG1846 Transcriptional regulators                        65   7e-11
MA2051 [K] COG1846 Transcriptional regulators                          64   1e-10
MA0180 [K] COG1846 Transcriptional regulators                          59   5e-09
RSc1295 [K] COG1846 Transcriptional regulators                         55   9e-08
NMA1122 [R] COG0596 Predicted hydrolases or acyltransferases (al...    55   1e-07

>SMc00562 [K] COG1846 Transcriptional regulators
          Length = 150

 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 68/127 (53%)

Query: 55  MPLTSPQEFLGFLLGSTHRRISNAFARVLKPYDITPEQWSILLMICDREGINQKEVXXXX 114
           MP  +    L   L + +R++ + F   +K   +T  +  +L  +  +EG+NQ+E+    
Sbjct: 1   MPKPNDNRELFDALATVNRKLRSVFDARVKERGLTLPRARMLFALARKEGLNQRELAEEL 60

Query: 115 XKDQPTTARIVELLQKKGFIHKTMSPTDRRAFQLYATETGKSLIKRTVSLEQQTIAAAVN 174
             + PT  R+++ ++K+GFI + +  +DRRA Q++ T+ G+S+      L        + 
Sbjct: 61  DIETPTIVRLLDGMEKQGFIERRVELSDRRAKQIHMTDVGRSVADEIQKLASDIREEVLG 120

Query: 175 GLRPEQI 181
           GL+P++I
Sbjct: 121 GLQPQEI 127


>MA2051 [K] COG1846 Transcriptional regulators
          Length = 153

 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 74/135 (54%), Gaps = 5/135 (3%)

Query: 57  LTSPQEFLGFLLGSTHRRISNAFARVLKPYDITPEQWSILLMICDREGINQKEVXXXXXK 116
           +  P+E  G  +   +R      A+ L+PY I   Q+  L+++  R+GI+Q+ +      
Sbjct: 1   MEDPREICG-PIAHIYRSHLAYMAKELEPYGIGSGQFDFLMVLYRRDGISQETLARTLKV 59

Query: 117 DQPTTARIVELLQKKGFIHKTMSPTDRRAFQLYATETGKSLIKRTVSLEQ--QTIAAAVN 174
            + T+ R ++ L+K+G++++ +   DRRA+++Y TE GK +  R + LE+    +   ++
Sbjct: 60  SKATSTRAIQSLEKEGYVYRQVDEEDRRAYKVYLTEKGKEM--RGIVLEKLLSFVDTLLS 117

Query: 175 GLRPEQIEDLRSMLE 189
              PE+ E  R +++
Sbjct: 118 DFTPEEKETFRRLVQ 132


>MA0180 [K] COG1846 Transcriptional regulators
          Length = 156

 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 71/137 (51%), Gaps = 4/137 (2%)

Query: 61  QEFLGFLLGSTHRRISNAFARVLKPYDITPEQWSILLMICDREGINQKEVXXXXXKDQPT 120
           +EF+G  +   +R       + ++PY I   Q+  L+ +   +G+NQ+ +      D+ T
Sbjct: 18  KEFIGKAISYLYRYEQVYIGKKIEPYGIGSGQFPFLMRLYREDGVNQESLSDYLKIDKGT 77

Query: 121 TARIVELLQKKGFIHKTMSPTDRRAFQLYATETGKSL--IKRTVSLEQQTIAAAVNGLRP 178
           T R ++ L  +G++ +     DRR+++++ +E  K L    + ++LE + I    +G   
Sbjct: 78  TTRAIQKLADEGYVFRQRDEKDRRSYRIFLSEKAKKLEPDMKKIALEWEDI--LFSGFDD 135

Query: 179 EQIEDLRSMLELIYHNT 195
            Q +++ + LE+++ N 
Sbjct: 136 SQRKEITNSLEIMFENV 152


>RSc1295 [K] COG1846 Transcriptional regulators
          Length = 147

 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 63/133 (47%)

Query: 62  EFLGFLLGSTHRRISNAFARVLKPYDITPEQWSILLMICDREGINQKEVXXXXXKDQPTT 121
           E +G+LLG     +S A  + +   D+T  Q S L+++ +       ++      D  + 
Sbjct: 3   ESVGYLLGRAKTALSMAIEQEVTLMDVTHSQASCLMLLANGRCQTATDLGRELNTDIGSL 62

Query: 122 ARIVELLQKKGFIHKTMSPTDRRAFQLYATETGKSLIKRTVSLEQQTIAAAVNGLRPEQI 181
            R++  ++K+G I +  S +DRR   L  T+ G++L +R  ++  Q +     G    ++
Sbjct: 63  TRMLSRMEKRGLIERMRSESDRRVVHLALTDAGRTLAERMPAIYTQVLNRFFAGFTQAEV 122

Query: 182 EDLRSMLELIYHN 194
           + LR +L     N
Sbjct: 123 KTLRGLLRRALDN 135


>NMA1122 [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta
           hydrolase superfamily)
          Length = 157

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 67/131 (51%), Gaps = 5/131 (3%)

Query: 57  LTSPQEFLGFLLGSTHRRISNAFARVLKPYDITPEQWSILLMICDREGINQKEVXXXXXK 116
           +  P+E  G ++   +R      A+ L+ Y I   Q+  L+++  ++GI+Q+ +      
Sbjct: 7   MADPKEIFGPIV-HIYRTHLEYMAKELEVYRIGSGQYDFLMVLYHKDGISQENLARMLKV 65

Query: 117 DQPTTARIVELLQKKGFIHKTMSPTDRRAFQLYATETGKSLIKRTVSLEQ--QTIAAAVN 174
            + T+ R ++ L+K+G++++     D RA+++Y T+ GK +  R V  E+    I    +
Sbjct: 66  SKATSTRAIQNLEKEGYVYREKDENDLRAYKVYLTDKGKEM--RGVIFEKLVSFIDVLFS 123

Query: 175 GLRPEQIEDLR 185
              PE+ E  R
Sbjct: 124 DFTPEEKEIFR 134


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 12,121,391
Number of extensions: 414112
Number of successful extensions: 788
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 791
Number of HSP's successfully gapped: 21
Length of query: 201
Length of database: 38,378,431
Length adjustment: 101
Effective length of query: 100
Effective length of database: 26,729,697
Effective search space: 2672969700
Effective search space used: 2672969700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)