BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0506.0005.p (470 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ML0276 [P] COG0607 Rhodanese-related sulfurtransferase 351 1e-96 STM0022 [NU] COG3121 P pilus assembly protein, chaperone PapD 192 1e-48 YMR167w [L] COG0323 DNA mismatch repair enzyme (predicted ATPase) 167 5e-41 SPAC19G12.02c [L] COG0323 DNA mismatch repair enzyme (predicted ... 145 1e-34 YNL082w [L] COG0323 DNA mismatch repair enzyme (predicted ATPase) 140 5e-33 >ML0276 [P] COG0607 Rhodanese-related sulfurtransferase Length = 695 Score = 351 bits (901), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 180/337 (53%), Positives = 237/337 (70%), Gaps = 4/337 (1%) Query: 2 LDEHIANQIAAGEVVERPASVVKELVENAIDAGSTRIEVSVEEGGLQSIRVKDNGSGIDP 61 L+E +ANQIAAGEVVERPASVVKELVEN+IDAGS++I ++VEE GL+ I V DNG G++ Sbjct: 46 LNEALANQIAAGEVVERPASVVKELVENSIDAGSSKIIINVEEAGLRLIEVIDNGLGLEK 105 Query: 62 EDCETAFYRHATSKIVNGRDLFQITSLGFRGEALPSIASVSKLSLLTSSNEDGKGRALDI 121 ED A RHATSKI + DLF+I +LGFRGEALPSIASVS++++ TS+ E+ G L Sbjct: 106 EDVALALRRHATSKIKDSADLFRIRTLGFRGEALPSIASVSQMTIETSTAEEESGTKLVA 165 Query: 122 EGGKLIRNEDEPAGK--GSDLAVRELFYNTPARLKYMKSVQTELGHISDTMYRVALAHPS 179 +GG + EP K G+ ++V LFYNTPARLKY+KS+Q EL HI+D + R++LAHP Sbjct: 166 KGGNI--ETLEPLAKRVGTKISVANLFYNTPARLKYIKSLQAELSHITDIINRLSLAHPE 223 Query: 180 ISFTLHHNGNQLLHTLGNGDLLQVIAAVYGTSAAKAMLPLAAEDPDYRISGYVSRPEWTR 239 ISFTL + G + L T GNGDL QVIAA+YG AK M + D D+ ++GYVS PE TR Sbjct: 224 ISFTLVNEGKEFLKTAGNGDLRQVIAAIYGIGTAKKMRQIKGSDLDFELTGYVSLPELTR 283 Query: 240 SNRNAVTTIVGGRYIRSNGLNAAIMRAYHTLLPINRYPLLVLQLEMHPSLVDVNVHPAKL 299 +NRN +T ++ GR+I++ LN AI+ Y L + R+P +L +++ P+L DVNVHP K Sbjct: 284 ANRNYITILINGRFIKNFLLNRAILEGYGNRLMVGRFPFAILSIKIDPTLADVNVHPTKQ 343 Query: 300 EVRFSKEAELYAFVEQEIRKVLMGQSLIPRPSKEIIG 336 EVR SKE EL A + + I + L LIP + + G Sbjct: 344 EVRLSKERELMALISKAIDEALSEGVLIPEALENLQG 380 >STM0022 [NU] COG3121 P pilus assembly protein, chaperone PapD Length = 228 Score = 192 bits (487), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 0/320 (0%), Positives = 0/320 (0%), Gaps = 3/320 (0%) Query: 2 LDEHIANQIAAGEVVERPASVVKELVENAIDAGSTRIEVSVEEGGLQSIRVKDNGSGIDP 61 L A ++ A ++ ++ ++ + I+ + Sbjct: 12 LLLLSAAGLSFAAQAGGIALGATRVIYPQGSKQTSLPIINSSASNVFLIQSWVANADGSR 71 Query: 62 EDCETAFYRHATSKIVNGRDLFQITSLGFRGEALPSIASVSKLSLLTSSNEDGKGRALDI 121 + L + S+ ++ ++ + G +L I Sbjct: 72 STDFIITPPLFVIQPKKENILRIMYVGPSLPTDRESVFYLNSKAIPSVDKNKLTGNSLQI 131 Query: 122 EGGKLIRNEDEPAGKGSDLAVRELFYNTPARLKYMKSVQTELGHISDTMYRVALAHPSIS 181 +I+ P A + ++S A + Sbjct: 132 ATQSVIKLFIRPKNLAEAPAHAPSTLRCRNERGQLTITNPSPYYVSMVELYSAGKKLPNT 191 Query: 182 FTLHHNGNQLLHTLGNGDLLQVIAAVYGTSAAKAMLPLAAEDPDYRISGYVSRPEWTRSN 241 Sbjct: 192 MVPPKGA- 250 Query: 242 RNAVTTIVGGRYIRSNGLNAAIMRAYHTLLPINRYPLLVLQLEMHPSLVDVNVHPAKLEV 301 Sbjct: 251 -- 308 Query: 302 RFSKEAELYAFVEQEIRKVL 321 Sbjct: 309 328 >YMR167w [L] COG0323 DNA mismatch repair enzyme (predicted ATPase) Length = 673 Score = 167 bits (422), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 18/315 (5%), Positives = 59/315 (18%), Gaps = 7/315 (2%) Query: 2 LDEHIANQIAAGEVVERPASVVKELVENAIDAGSTRIEVSVEEGGLQSIRVKDNGSGIDP 61 + + + + + + Sbjct: 8 QQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERV 67 Query: 62 EDCETAFYRHATSKIVNGRDLFQITSLGFRGEALPSIASVSKLSLLTSSNEDGKGRALDI 121 I + + + S+ + + ++ ++ Sbjct: 68 GQTLGRKEARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIED 127 Query: 122 EGGKLIRNEDEPAGK-GSDLAVRELFYNTPARLKYMKSVQTELGHISDTMYRVALAHPSI 180 + L + + + + + + L V I Sbjct: 128 DKVLLQQLISTISNWKNDLKTPSQAAASAIGERDRIFAHCYGLYDAHLKACNVLDFDDLI 187 Query: 181 SFTLHHNG--NQLLHTLGNGDLLQVIAAVYGTSAAKAMLPL---AAEDPDYR-ISGYVSR 234 ++ N ++ T+ ++ L + S Sbjct: 188 LLPTLLLQANEEVRKRWQNKIRYLLVDEYQDTNTSQYELVKLLVGSRARFTVVGDDDQSI 247 Query: 235 PEWTRSNRNAVTTIVGGRYIRSNGLNAAIMRAYHTLLPINRYPLLVLQLEMHPSLVDVNV 294 W + + + R+ +L + L Sbjct: 248 YSWRGARPQNLVLLSQDFPALKVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFSELG 307 Query: 295 HPAKLEVRFSKEAEL 309 + A+L+V + E Sbjct: 308 YGAELKVLSANNEEH 322 >SPAC19G12.02c [L] COG0323 DNA mismatch repair enzyme (predicted ATPase) Length = 673 Score = 145 bits (366), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 15/329 (4%), Positives = 55/329 (16%), Gaps = 15/329 (4%) Query: 2 LDEHIANQIAAGEVVERPASVVKELVENAIDAGSTRIEVSVEEGGLQSIRVKDNGSGIDP 61 + + V+ S ++ N I + K + Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 62 EDCETAFYRHATSKIVNGRDLFQITSLGFRGEALPSIASVSKLSLLTSS-NEDGKGRALD 120 I L + ++ ++ Sbjct: 67 VGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE 126 Query: 121 IEG-GKLIRNEDEPAGKGSDLAVRELFYNTPARLKYM-KSVQTELGHISDTMYRVALAHP 178 + K + + + + Sbjct: 127 DDKVLLQQLISTISNWKNDLKTPSQAAASAIGERDRIFAHCYGLYDAHLKACNVLDFDDL 186 Query: 179 SISFTLHH---NGNQLLH--TLGNGDLLQVIAAVYGTSAAKAMLPLAAEDPDYRISGYVS 233 + TL + + + + +L + R + Sbjct: 187 ILLPTLLLQANEEVRKRWQNKIRYLLVDEYQDTNTSQYELVKLLVGS----RARFTVVGD 242 Query: 234 RPEW--TRSNRNAVTTIVGGRYIRSNGLNAAIMRAYHTLLPINRYPLLVLQLEMHPSLVD 291 + + ++ + + + + I + +++ H Sbjct: 243 DDQSIYSWRGARPQNLVLLSQDFPALKVIKLEQNYRSS-GRILKAANILIANNPHVFEKR 301 Query: 292 VNVHPAKLEVRFSKEAELYAFVEQEIRKV 320 + A + + Sbjct: 302 LFSELGYGAELKVLSANNEEHEAERVTGE 330 >YNL082w [L] COG0323 DNA mismatch repair enzyme (predicted ATPase) Length = 904 Score = 140 bits (353), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 95/324 (29%), Positives = 168/324 (51%), Gaps = 34/324 (10%) Query: 7 ANQIAAGEVVERPASVVKELVENAIDAGSTRIEVSVEEGGLQSIRVKDNGSGIDPEDCET 66 ++I +G+V+ + VKELV+N+IDA + +IE+ ++ GL+SI DNG GIDP + E Sbjct: 43 VHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFKDYGLESIECSDNGDGIDPSNYEF 102 Query: 67 AFYRHATSKIVNGRDLFQITSLGFRGEALPSIASVSKLSLLTSSNEDGKGRALDIEG-GK 125 +H TSKI +D+ ++ +LGFRGEAL S+ ++KLS++T+++ K L+ + G Sbjct: 103 LALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGIAKLSVITTTSP-PKADKLEYDMVGH 161 Query: 126 LIRNEDEPAGKGSDLAVRELFYNTPARLK-YMKSVQTELGHISDTMYRVALAHPSISFTL 184 + KG+ + V +LF+N P R K + K+ + + + A+ + +I F++ Sbjct: 162 ITSKTTTSRNKGTTVLVSQLFHNLPVRQKEFSKTFKRQFTKCLTVIQGYAIINAAIKFSV 221 Query: 185 HH-----NGNQLLHTLGNGDLLQVIAAVYGTSAAKA----------------MLPLAAED 223 + N +L T+ N + + I++V+G + ML +D Sbjct: 222 WNITPKGKKNLILSTMRNSSMRKNISSVFGAGGMRGLEEVDLVLDLNPFKNRMLGKYTDD 281 Query: 224 PDY-------RISGYVSRPEW--TRSNRNAVTTIVGGRYIRSNGLNAAIMRAYHTLLPIN 274 PD+ R+ GY+S+ + R++++ V R + + L Y T + Sbjct: 282 PDFLDLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEYSTLLKCCNEVYKTFNNV- 340 Query: 275 RYPLLVLQLEMHPSLVDVNVHPAK 298 ++P + L LE+ SL+DVNV P K Sbjct: 341 QFPAVFLNLELPMSLIDVNVTPDK 364 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.134 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 31,815,617 Number of extensions: 1259370 Number of successful extensions: 2921 Number of sequences better than 1.0e-05: 10 Number of HSP's gapped: 2904 Number of HSP's successfully gapped: 11 Length of query: 470 Length of database: 38,378,431 Length adjustment: 110 Effective length of query: 360 Effective length of database: 25,691,691 Effective search space: 9249008760 Effective search space used: 9249008760 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 118 (50.1 bits)