BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0505.0012.p (556 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value VCA0578 [R] COG4533 ABC-type uncharacterized transport system, p... 143 6e-34 YPO0524 [R] COG4533 ABC-type uncharacterized transport system, p... 124 3e-28 STM3860 [R] COG4533 ABC-type uncharacterized transport system, p... 118 2e-26 STM0109 [R] COG4533 ABC-type uncharacterized transport system, p... 116 1e-25 yabN [R] COG4533 ABC-type uncharacterized transport system, peri... 114 5e-25 >VCA0578 [R] COG4533 ABC-type uncharacterized transport system, periplasmic component Length = 565 Score = 143 bits (361), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 100/321 (31%), Positives = 160/321 (49%), Gaps = 21/321 (6%) Query: 2 KLHSQFLKLHSHHGGPGEIPVTLDELAHTLGCTHRNALHIINKMAGLAWITWTPSRGRGK 61 +L QF L H G ++ L+++ L CT RNA ++NKM WI W P+ GRGK Sbjct: 5 RLRVQFETLFEHFQG-QDVETQLEDVTDILFCTRRNARIVLNKMEEEGWIEWHPAAGRGK 63 Query: 62 RSKLTFLADAEEIALESMKQAISSKDVGSAIEGIRGHARSSSLQNTLQGWLLAYFGHHSE 121 S+L F +++ ++ ++ +G A + A + L ++ +Y G Sbjct: 64 LSQLIFKRSRADVSENLARRYLNEGKIGQAFAVLDQDA--AKLTQVIE----SYLG---- 113 Query: 122 IRSNKQIDTLRLPVNQKLHTFDPLYMNLLAESFVSSHVFDGLVGRSSERGIVPGLAHAWD 181 ++ + + +RLP ++L +P +E ++ VF GL E + P LAHAW Sbjct: 114 VQHQEGLQVVRLPYYRQLSMLNPQKPMRRSEQHIARQVFSGLTRLDEEEQLQPDLAHAWQ 173 Query: 182 VDGSRTGWTFHLRKEVLFHHGKVLSAEDVVYSLQRLMQTSQRTLYSSIFKEITGVEALNS 241 S T W F+LR V FH+G +L+ E +V +L +L R L ++F I V++ Sbjct: 174 A-LSDTHWRFYLRPGVRFHNGNLLTTELIVQNLWQL-----RLL--NLFAHIDRVDSPYP 225 Query: 242 TTVRIVLRKPNELFLPFLCTSRAAIVPRDMESGPEGDFGRRPVGTGPFKLVEISEELCVL 301 V + L+KP+ L + A I+P + + P DF PVGTGP+K+V E+ VL Sbjct: 226 WAVDVHLQKPDTRLPLLLAEACAKILPAESDRNP--DFDLMPVGTGPYKVVLNDEKRLVL 283 Query: 302 EVFPYYYQGRAHLDRVEILYV 322 + F Y+ R LDRVE+ + Sbjct: 284 QAFDGYFGFRPLLDRVEVWVI 304 >YPO0524 [R] COG4533 ABC-type uncharacterized transport system, periplasmic component Length = 553 Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 90/324 (27%), Positives = 150/324 (46%), Gaps = 25/324 (7%) Query: 2 KLHSQFLKLHSHHGGPGEIPVTLDELAHTLGCTHRNALHIINKMAGLAWITWTPSRGRGK 61 +L QF++L + G TL LA L C+ R+ ++ KM W+ W GRGK Sbjct: 5 RLQQQFIRLWQRYNGQS-TETTLQALAEVLNCSRRHVRSLLGKMQHAGWLDWQAEAGRGK 63 Query: 62 RSKLTFLADAEEIALESMKQAISSKDVGSAIEGIRGHARSSSLQNTLQGWLLAYFGHHSE 121 RS+L FL + + ++ + + ++ + + ++ LL+ G Sbjct: 64 RSQLIFLRSGLALQQQRAEELLEQDHIDQLVQLVGD-------KKAVRQMLLSQLG--RS 114 Query: 122 IRSNKQIDTLRLPVNQKLHTFDPLYMNLLAESFVSSHVFDGLVGRSSERG-IVPGLAHAW 180 R K I LR+ + L P +E+ + +F+GL + E G + P L+H W Sbjct: 115 FRQGKHI--LRVLYYRPLENLLPGTALRRSETHMVRQIFNGLTRINEENGELEPDLSHHW 172 Query: 181 DVDGSRTGWTFHLRKEVLFHHGKVLSAEDVVYSLQRLMQTSQRTLYSSIFKEITGVEALN 240 + W F+LR + FHHG+ L DV+ SL RL+ +F I V + Sbjct: 173 QAI-TPLHWRFYLRPAIHFHHGRELEMSDVISSLTRLIP-------QPLFSHIAEVRSPT 224 Query: 241 STTVRIVLRKPNELFLPFLCTS-RAAIVPRDMESGPEGDFGRRPVGTGPFKLVEISEELC 299 + + L P+ +LP+L S A I+P++ E+ P DF R+P+GTGP+ ++ Sbjct: 225 PYVIDVYLHSPDH-WLPWLLGSVHAMILPQEWETQP--DFHRQPIGTGPYSVIRNHHSQL 281 Query: 300 VLEVFPYYYQGRAHLDRVEILYVP 323 ++ F Y+ RA +D V I +P Sbjct: 282 KIQAFDNYFGFRALIDEVNIWVLP 305 >STM3860 [R] COG4533 ABC-type uncharacterized transport system, periplasmic component Length = 585 Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 101/361 (27%), Positives = 167/361 (46%), Gaps = 38/361 (10%) Query: 6 QFLKLHSHHGGPGEIPVTLDELAHTLGCTHRNALHIINKMAGLAWITWTPSRGRGKRSKL 65 ++LKL H+G + VTL ELA L CT R+ +++ +M W+ W GRG R++L Sbjct: 9 KYLKLLQHYGD-KPVSVTLQELADVLFCTRRHMRNLLLQMQEAKWLIWQSQAGRGHRARL 67 Query: 66 TFLADAEEIALESMKQAISSKDVGSAIE--GIRGHARSSSLQNTLQGWLLAYFGHHSEIR 123 E++ E +Q + S + AI+ G H + L++ L G+ +R Sbjct: 68 HLRYKPEQLLSEKAEQLLESGHIDQAIQLLGKNKHQVAQLLRSKL--------GY--SVR 117 Query: 124 SNKQIDTLRLPVNQKLHTFDPLYMNLLAESFVSSHVFDGLVGRSSERGIVPG-LAHAW-D 181 ++ Q L +P + + + P +E + +F GL + E+G V LAH W Sbjct: 118 ADYQ--RLCIPYYRTMPSLCPGIPLRRSEQHLVRQIFSGLTRINEEKGEVEADLAHHWRQ 175 Query: 182 VDGSRTGWTFHLRKEVLFHHGKVLSAEDVVYSLQRLMQTSQRTLYSSIFKEITGVEALNS 241 +D R W F+LR VL+H G+ L+ + V+ SL R + +F + ++A Sbjct: 176 IDPLR--WRFYLRPAVLWHDGQELTIDAVIASLTRSAKL-------PLFSHLQTIQATGP 226 Query: 242 TTVRIVLRKPNELFLPFLCTSRAAIVPRDMESGPEGDFGRRPVGTGPFKLVEISEELCVL 301 ++ I L P+ L A I+P D DF PVGTGP+++VE + + Sbjct: 227 LSLEITLAHPDNRLPLLLSHIDAMILPPDHTQ--RADFPAHPVGTGPYEVVENNGFHLQM 284 Query: 302 EVFPYYYQGRAHLDRVEILYVPFGIEQVQPDTASAFHVIPNPSTADAASW--SRIHSESY 359 + F +Y+ R LD VE+ + P+ ++ + S D A+W S + E Y Sbjct: 285 KAFDHYFGLRGLLDEVEVF--------IWPNLTETDNLAESLSDNDTAAWLSSSLSDEDY 336 Query: 360 V 360 V Sbjct: 337 V 337 >STM0109 [R] COG4533 ABC-type uncharacterized transport system, periplasmic component Length = 552 Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 87/323 (26%), Positives = 149/323 (46%), Gaps = 23/323 (7%) Query: 2 KLHSQFLKLHSHHGGPGEIPVTLDELAHTLGCTHRNALHIINKMAGLAWITWTPSRGRGK 61 +L QF++L G + TL+ELA L C+ R+ ++N M W+TW GRGK Sbjct: 5 RLQQQFIRLWQCCDGKTQ-DTTLNELADLLNCSRRHMRTLLNTMQARGWLTWEAEVGRGK 63 Query: 62 RSKLTFLADAEEIALESMKQAISSKDVGSAIEGIRGHARSSSLQNTLQGWLLAYFGHHSE 121 RS+LTFL + + + + + ++ + + + L+++ G Sbjct: 64 RSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKSAVRQM-------LISHLG--RS 114 Query: 122 IRSNKQIDTLRLPVNQKLHTFDPLYMNLLAESFVSSHVFDGLVGRSSERG-IVPGLAHAW 180 R + I LR+ + +H P +E+ ++ +F L + E G + +AH W Sbjct: 115 FRQGRHI--LRVLYYRPMHNLLPGTALRRSETHIARQIFSSLTRVNEENGELEADIAHHW 172 Query: 181 DVDGSRTGWTFHLRKEVLFHHGKVLSAEDVVYSLQRLMQTSQRTLYSSIFKEITGVEALN 240 S W F+LR + FHHG+ L EDV+ SL R+ TL ++ IT +++ Sbjct: 173 Q-QISPLLWRFYLRPGIHFHHGRELEMEDVISSLTRI-----NTL--PLYSHITKIDSPT 224 Query: 241 STTVRIVLRKPNELFLPFLCTSRAAIVPRDMESGPEGDFGRRPVGTGPFKLVEISEELCV 300 + T+ I L +P+ L A I+PR E+ +F P+GTGP+ + + Sbjct: 225 AWTLDIHLSQPDRWLPWLLGQVPAMILPRKWET--LANFASHPIGTGPYAVRRNTPNQLK 282 Query: 301 LEVFPYYYQGRAHLDRVEILYVP 323 + F Y+ RA +D V + +P Sbjct: 283 ILAFDDYFGYRALIDEVNVWVLP 305 >yabN [R] COG4533 ABC-type uncharacterized transport system, periplasmic component Length = 551 Score = 114 bits (285), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 88/323 (27%), Positives = 150/323 (46%), Gaps = 23/323 (7%) Query: 2 KLHSQFLKLHSHHGGPGEIPVTLDELAHTLGCTHRNALHIINKMAGLAWITWTPSRGRGK 61 +L QF++L G + TL+ELA L C+ R+ ++N M W+TW GRGK Sbjct: 5 RLQQQFIRLWQCCEGKSQ-DTTLNELAALLSCSRRHMRTLLNTMQDRGWLTWEAEVGRGK 63 Query: 62 RSKLTFLADAEEIALESMKQAISSKDVGSAIEGIRGHARSSSLQNTLQGWLLAYFGHHSE 121 RS+LTFL + + + + + ++ + A T++ L+++ G Sbjct: 64 RSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKA-------TVRQMLVSHLGR--S 114 Query: 122 IRSNKQIDTLRLPVNQKLHTFDPLYMNLLAESFVSSHVFDGLVGRSSERG-IVPGLAHAW 180 R + I LR+ + L P +E+ ++ +F L + E G + +AH W Sbjct: 115 FRQGRHI--LRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEENGELEADIAHHW 172 Query: 181 DVDGSRTGWTFHLRKEVLFHHGKVLSAEDVVYSLQRLMQTSQRTLYSSIFKEITGVEALN 240 S W F LR V FHHG+ L +DV+ SL+R+ TL ++ I + + Sbjct: 173 Q-QISPLHWRFFLRPGVHFHHGRELEMDDVIASLKRI-----NTL--PLYSHIADIVSPT 224 Query: 241 STTVRIVLRKPNELFLPFLCTSRAAIVPRDMESGPEGDFGRRPVGTGPFKLVEISEELCV 300 T+ I L +P+ L A I+PR+ E+ +F P+GTGP+ ++ S Sbjct: 225 PWTLDIHLTQPDRWLPLLLGQVPAMILPREWET--LSNFASHPIGTGPYAVIRNSTNQLK 282 Query: 301 LEVFPYYYQGRAHLDRVEILYVP 323 ++ F ++ RA +D V + +P Sbjct: 283 IQAFDDFFGYRALIDEVNVWVLP 305 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.137 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 40,792,583 Number of extensions: 1629496 Number of successful extensions: 3196 Number of sequences better than 1.0e-05: 152 Number of HSP's gapped: 3077 Number of HSP's successfully gapped: 152 Length of query: 556 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 445 Effective length of database: 25,576,357 Effective search space: 11381478865 Effective search space used: 11381478865 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 118 (50.1 bits)