BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0505.0010.p (216 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl974 [T] COG0664 cAMP-binding proteins - catabolite gene activ... 50 3e-06 yeiL [T] COG0664 cAMP-binding proteins - catabolite gene activat... 49 7e-06 ZyeiL [T] COG0664 cAMP-binding proteins - catabolite gene activa... 49 7e-06 ECs3055 [T] COG0664 cAMP-binding proteins - catabolite gene acti... 49 7e-06 >AGl974 [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Length = 82 Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 0/124 (0%), Positives = 0/124 (0%) Query: 6 MQWIADQDKIRMLAGHNGMMEIFSSGAISGMELRRYSDGEAICSVGDRLEHMFILVEGRL 65 M R+L+ + E+++ D + M + + Sbjct: 1 MAPNLLYRWRRLLSEGGAAAVDSDEPVVGNSEVKKLEDRVRELERMLGRKTMEVEILREA 60 Query: 66 KIHTLLPNGKSLLVRFARPMSVIGDVELLRQYPVKNEVVSMGESLLLAAGRALVLKEFEE 125 Sbjct: 61 120 Query: 126 NTAL 129 Sbjct: 121 124 >yeiL [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Length = 219 Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 8/148 (5%) Query: 22 NGMMEIFSSGAISGMELRRYSDGEAICSVGDRLEHMFILVEGRLKIHTLLPNGKSLLVRF 81 + + F + + L + + I G + +F L GR +++ L NG+ L+ F Sbjct: 4 SAFKDCFLTDVSADTRLFHFLARDYIVQEGQQPSWLFYLTRGRARLYATLANGRVSLIDF 63 Query: 82 ARPMSVIGDVELLRQYPVKNEVVSMGESLLLAAGRALVLKEFE----ENTALLRFLVGEL 137 IG++EL+ + V ++ E L AL +K + +T LR L L Sbjct: 64 FAAPCFIGEIELIDKDHEPRAVQAIEECWCL----ALPMKHYRPLLLNDTLFLRKLCVTL 119 Query: 138 SHKMYTLGQTTALNLLYPLENRFASYLL 165 SHK Y + N +PL NR A+++L Sbjct: 120 SHKNYRNIVSLTQNQSFPLVNRLAAFIL 147 >ZyeiL [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Length = 219 Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 8/148 (5%) Query: 22 NGMMEIFSSGAISGMELRRYSDGEAICSVGDRLEHMFILVEGRLKIHTLLPNGKSLLVRF 81 + + F + + L + + I G + +F L GR +++ L NG+ L+ F Sbjct: 4 SAFKDCFLTDVSADTRLFHFLARDYIVQEGQQPSWLFYLTRGRARLYATLANGRVSLIDF 63 Query: 82 ARPMSVIGDVELLRQYPVKNEVVSMGESLLLAAGRALVLKEFE----ENTALLRFLVGEL 137 IG++EL+ + V ++ E L AL +K + +T LR L L Sbjct: 64 FAAPCFIGEIELIDKDHEPRAVQAIEECWCL----ALPMKHYRPLLLNDTLFLRKLCVTL 119 Query: 138 SHKMYTLGQTTALNLLYPLENRFASYLL 165 SHK Y + N +PL NR A+++L Sbjct: 120 SHKNYRNIVSLTQNQSFPLVNRLAAFIL 147 Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 8/148 (5%) Query: 22 NGMMEIFSSGAISGMELRRYSDGEAICSVGDRLEHMFILVEGRLKIHTLLPNGKSLLVRF 81 + + F + + L + + I G + +F L GR +++ L NG+ L+ F Sbjct: 4 SAFKDCFLTDVSADTRLFHFLARDYIVQEGQQPSWLFYLTRGRARLYATLANGRVSLIDF 63 Query: 82 ARPMSVIGDVELLRQYPVKNEVVSMGESLLLAAGRALVLKEFE----ENTALLRFLVGEL 137 IG++EL+ + V ++ E L AL +K + +T LR L L Sbjct: 64 FAAPCFIGEIELIDKDHEPRAVQAIEECWCL----ALPMKHYRPLLLNDTLFLRKLCVTL 119 Query: 138 SHKMYTLGQTTALNLLYPLENRFASYLL 165 SHK Y + N +PL NR A+++L Sbjct: 120 SHKNYRNIVSLTQNQSFPLVNRLAAFIL 147 >ECs3055 [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Length = 219 Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 8/148 (5%) Query: 22 NGMMEIFSSGAISGMELRRYSDGEAICSVGDRLEHMFILVEGRLKIHTLLPNGKSLLVRF 81 + + F + + L + + I G + +F L GR +++ L NG+ L+ F Sbjct: 4 SAFKDCFLTDVSADTRLFHFLARDYIVQEGQQPSWLFYLTRGRARLYATLANGRVSLIDF 63 Query: 82 ARPMSVIGDVELLRQYPVKNEVVSMGESLLLAAGRALVLKEFE----ENTALLRFLVGEL 137 IG++EL+ + V ++ E L AL +K + +T LR L L Sbjct: 64 FAAPCFIGEIELIDKDHEPRAVQAIEECWCL----ALPMKHYRPLLLNDTLFLRKLCVTL 119 Query: 138 SHKMYTLGQTTALNLLYPLENRFASYLL 165 SHK Y + N +PL NR A+++L Sbjct: 120 SHKNYRNIVSLTQNQSFPLVNRLAAFIL 147 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.324 0.139 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 14,679,546 Number of extensions: 546521 Number of successful extensions: 1051 Number of sequences better than 1.0e-05: 6 Number of HSP's gapped: 1051 Number of HSP's successfully gapped: 6 Length of query: 216 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 114 Effective length of database: 26,614,363 Effective search space: 3034037382 Effective search space used: 3034037382 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 113 (48.1 bits)