BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0505.0003.p (221 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value DR0987 [TK] COG2197 Response regulator containing a CheY-like re... 128 5e-30 CAC1455 [TK] COG2197 Response regulator containing a CheY-like r... 128 6e-30 CAC0240 [TK] COG2197 Response regulator containing a CheY-like r... 123 2e-28 DR0432 [TK] COG2197 Response regulator containing a CheY-like re... 123 2e-28 DR1558 [TK] COG2197 Response regulator containing a CheY-like re... 122 4e-28 >DR0987 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 239 Score = 128 bits (322), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 75/205 (36%), Positives = 115/205 (56%), Gaps = 1/205 (0%) Query: 6 VLVVDDHAHAREAMCEILAMDERFEVIGAVGSGAEAIERTGLWMPDLILIDIQMPEMDGL 65 +L+VDDH R+ E+L + V+G GSG EA+ + PD+IL+D+ MP M+G+ Sbjct: 28 LLLVDDHPVVRKGTRELLEGETDLRVVGEAGSGEEALAQARSLTPDVILMDVSMPGMNGI 87 Query: 66 ETTRRIKLEFPYVKIVIVTVSDEISYLFEALKQGAQGYLLKNLAPSTWIEYLLAIVSEEV 125 E T+ IK E P V ++++T D+ +Y+F L+ GA GYLLKN + + + A+ + E Sbjct: 88 EATKAIKAEQPSVGVLVLTSYDDDAYVFALLEAGAAGYLLKNASEDDLLGAVRAVAAGES 147 Query: 126 PLSRELAFQILKEFAVASVKEERE-ALTAREKEILGCVSSGSTNKEIAATLGISEHTVXX 184 L +A ++L+ F+VAS E L+ RE E+L +SG TNKEIA L IS TV Sbjct: 148 ALHPSIARKVLERFSVASTPTPPEDDLSPRELEVLRVAASGRTNKEIARDLDISPRTVQV 207 Query: 185 XXXXXXXXXXXXXRTQLTRYAMEQG 209 RT+ + +++G Sbjct: 208 HLANIFSKLGVGSRTEAVLHGIKRG 232 >CAC1455 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 225 Score = 128 bits (322), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 68/215 (31%), Positives = 119/215 (55%), Gaps = 9/215 (4%) Query: 5 RVLVVDDHAHAREAMCEILAMDERFEVIGAVGSGAEAIERTGLWMPDLILIDIQMPEMDG 64 +VL+ DD R+++ +L+ ++ E++G +G E +E + PD+IL+D++MPEMDG Sbjct: 3 KVLIADDQELIRQSLKIVLSANKDIEIVGTACNGNEVVESVRKYKPDVILMDVRMPEMDG 62 Query: 65 LETTRRIKLEFPYVKIVIVTVSDEISYLFEALKQGAQGYLLKNLAPSTWIEYLLAIVSEE 124 ++ T+ IK +P +KI+++T D+ Y+F ALK GA GYLLK ++ + + +V+ Sbjct: 63 VQCTKVIKESYPNIKIIVLTTFDDDEYIFNALKYGASGYLLKGVSMDELVRAIHTVVNGG 122 Query: 125 VPLSRELAFQILKEFA---------VASVKEEREALTAREKEILGCVSSGSTNKEIAATL 175 ++ ++ ++ K F+ A K+ + + E I+ CV G +NKEIA L Sbjct: 123 AMINPDITAKVFKLFSQMAQGDISIQAGTKKNTDDICDAEWNIIKCVGFGLSNKEIAKKL 182 Query: 176 GISEHTVXXXXXXXXXXXXXXXRTQLTRYAMEQGL 210 +SE TV RTQL +A++ G+ Sbjct: 183 RLSEGTVRNYLSNILNKLNFRDRTQLAIWAVQTGV 217 >CAC0240 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 208 Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 74/211 (35%), Positives = 119/211 (56%), Gaps = 12/211 (5%) Query: 5 RVLVVDDHAHAREAMCEILAMDERFEVIGAVGSGAEAIERTGLWMPDLILIDIQMPEMDG 64 +VL+VDD A RE++ +L +++ E+IG +G EA + PD++L+DI+MP MDG Sbjct: 2 KVLIVDDDALIRESLSILLDLEDEIEIIGTCANGQEAFDFCKNNRPDIVLMDIRMPIMDG 61 Query: 65 LETTRRIKLEFPYVKIVIVTVSDEISYLFEALKQGAQGYLLKNLAPSTWIEYLLAIVSEE 124 + T+ IK F +K+VI+T + Y+ EALK GA+GY+LKN + + I+ L A+V+ Sbjct: 62 VLGTKVIKESFKDIKVVILTTFKDDEYIKEALKNGAEGYILKNQSSDSIIDSLKAVVNGN 121 Query: 125 VPLSRELAFQILKEFAVASVKEERE-------ALTAREKEILGCVSSGSTNKEIAATLGI 177 + + +A + + F +KE++ LT RE E+L + G +NKEIA+ L + Sbjct: 122 MVFEQNVA-KTISNF----IKEDKSNNGLEQYNLTEREMEVLRNIGDGLSNKEIASKLYL 176 Query: 178 SEHTVXXXXXXXXXXXXXXXRTQLTRYAMEQ 208 SE TV RTQL + ++ Sbjct: 177 SEGTVRNYITSLLEKLELRDRTQLAIFYLKN 207 >DR0432 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 214 Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 120/219 (54%), Gaps = 14/219 (6%) Query: 4 CRVLVVDDHAHAREAMCEILAMDERFEVIGAVGSGAEAIERTGLWMPDLILIDIQMPEMD 63 RVL+ DDHA R+ + +L E VIG +G EA+ PD+IL+DIQMPE+D Sbjct: 2 IRVLLADDHALFRQGLRSLLE-SEGMRVIGEAANGREAVRYAADTQPDVILMDIQMPELD 60 Query: 64 GLETTRRIKLEFPYVKIVIVTVSDEISYLFEALKQGAQGYLLKNLAPSTWIEYLLAIVSE 123 G++ T+ I P +++++T+ + Y+FEA+K GA+GY+LK+ T I+ + + + Sbjct: 61 GVKATQSILEINPQARVIMITMYRQDRYVFEAVKAGARGYILKDADAGTLIDAITRVAAG 120 Query: 124 EVPLSRELAFQILKEFAVASVKEEREALTA--------REKEILGCVSSGSTNKEIAATL 175 E L ++A +L +F +++RE L + RE IL ++ G +N++IA L Sbjct: 121 EALLDADMAQNVLDDF-----RDKREELPSEKHADLNERETMILKLLAQGFSNQDIALRL 175 Query: 176 GISEHTVXXXXXXXXXXXXXXXRTQLTRYAMEQGLASRE 214 ISE TV RTQ YA+ +G+A+ E Sbjct: 176 DISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGIANLE 214 >DR1558 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 225 Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 71/211 (33%), Positives = 118/211 (55%), Gaps = 3/211 (1%) Query: 4 CRVLVVDDHAHAREAMCEILAMDERFEVIGAVGSGAEAIERTGLWMPDLILIDIQMPEMD 63 RVL+VDDHA R+ + L +DE EV+G +G EA++ P+++++D+ MP MD Sbjct: 14 VRVLLVDDHAVVRQGLRLFLGLDEGIEVVGEAANGEEALQEAERLRPEVVVMDLMMPVMD 73 Query: 64 GLETTRRIKLEFPYVKIVIVTVSDEISYLFEALKQGAQGYLLKNLAPSTWIEYLLAIVSE 123 G+ TR ++ P +++ +T + E + + A++ GA Y+LK+ + T + + A Sbjct: 74 GITATRELRRRLPDTEVIALTSTLEENKVNGAIEAGAISYMLKDASSDTLADAIHAAARG 133 Query: 124 EVPLSRELAFQILKEFAVASVKEEREALTAREKEILGCVSSGSTNKEIAATLGISEHTVX 183 EV L E A +++++F E RE+LT +E +L ++ G +NK+IAA G+SE TV Sbjct: 134 EVRLHPEAARRLVRDF---RSPEMRESLTPKETAVLQLLARGQSNKDIAAEQGVSEATVK 190 Query: 184 XXXXXXXXXXXXXXRTQLTRYAMEQGLASRE 214 RTQ YA++ G+AS E Sbjct: 191 THVSRLLSKLGLDSRTQAALYALKYGIASLE 221 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.134 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 14,206,186 Number of extensions: 526689 Number of successful extensions: 1932 Number of sequences better than 1.0e-05: 281 Number of HSP's gapped: 1952 Number of HSP's successfully gapped: 281 Length of query: 221 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 119 Effective length of database: 26,614,363 Effective search space: 3167109197 Effective search space used: 3167109197 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 114 (48.5 bits)