BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0504.0055.p (370 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA0840 [C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzym... 413 e-115 CC2129 [C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzym... 410 e-114 CC1802 [C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzym... 393 e-109 SMa2291 [C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzy... 185 1e-46 mll2211 [C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzy... 174 2e-43 >PA0840 [C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family Length = 346 Score = 413 bits (1061), Expect = e-115, Method: Compositional matrix adjust. Identities = 0/365 (0%), Positives = 0/365 (0%), Gaps = 4/365 (1%) Query: 9 TDKLFAPFRAGSLTLANRIVMAPMTRVFSPDGVPGEDVAAYYRRRAEGGVGLIVTEGTAI 68 + + AE E + Sbjct: 5 RIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGL 64 Query: 69 NHPSAVSHQNIPNIHGEASLKGWAKVVEEVHAAGGKIVPQLWHVGMARTIGELPNADALP 128 + + + + G + L + + + Sbjct: 65 TETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTD 124 Query: 129 VGPSGLNLAGEQITEPMTKEEISGIVXXXXXXXXXXXXVGFDGIELHGAHGYLIDQFFWE 188 ++ T K S + + Sbjct: 125 YLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAF 184 Query: 189 KTNKRTDEYGGDLEARTTFAVEIIDACRRAVGPDFPIILRFSQWKAGDYAAKLAQTPEEL 248 + R R+ + ++ + Y+ T Sbjct: 185 GVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGTLTGK 244 Query: 249 ARFLTPLSNAGVDIFHCSTRRFWLPEFEGSELNLAGWTKKITGKPTITVGSVGLSS---- 304 + A +F TR + + + + + V Sbjct: 245 YLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQPFVAS 304 Query: 305 EFGSAVTEQNEEDNLDRLMEKLEKAEFDLVAVGRALISDPAWPAKVQSGRKDEIIAFTPE 364 Sbjct: 305 364 Query: 365 ATRTL 369 Sbjct: 365 369 >CC2129 [C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family Length = 346 Score = 410 bits (1055), Expect = e-114, Method: Compositional matrix adjust. Identities = 0/367 (0%), Positives = 0/367 (0%), Gaps = 7/367 (1%) Query: 7 MNTDKLFAPFRAGSLTLANRIVMAPMTRVFSPDGVPGEDVAAYYRRRAEGGVGLIVTEGT 66 M ++ S + VA + + Sbjct: 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPE 60 Query: 67 AINHPSAVSHQNIPNIHGEASLKGWAKVVEEVHAAGGKIVPQLWHVGMARTIGELPNADA 126 + L +KV I P + Sbjct: 61 TQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKR 120 Query: 127 LPVGPSGLNLAG-EQITEPMTKEEISGIVXXXXXXXXXXXXVGFDGIELHGAHGYLIDQF 185 L + + + I Sbjct: 121 ----LQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYI 176 Query: 186 FWEKTNKRTDEYGG-DLEARTTFAVEIIDACRRAVGPDFPIILRFSQWKAGDYAAKLAQT 244 + + I + F + L G + Sbjct: 177 GVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCL 236 Query: 245 PEELARFLTPLSNAGVDIFHCSTRRFWLPEFEGSELNLAGWTKKITGKPTITVGSVGLSS 304 + RF E ++ +A + Sbjct: 237 GFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFV 296 Query: 305 EFGSAV-TEQNEEDNLDRLMEKLEKAEFDLVAVGRALISDPAWPAKVQSGRKDEIIAFTP 363 V Sbjct: 297 RRQPFVA 356 Query: 364 EATRTLY 370 Sbjct: 357 363 >CC1802 [C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family Length = 346 Score = 393 bits (1009), Expect = e-109, Method: Compositional matrix adjust. Identities = 0/367 (0%), Positives = 0/367 (0%), Gaps = 5/367 (1%) Query: 7 MNTDKLFAPFRAGSLTLANRIVMAPMTRVFSPDGVPGEDVAAYYRRRAEGGVGLIVTEGT 66 + + I + D D A + E + T Sbjct: 64 LTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQT 123 Query: 67 AINHPSAVSHQNIPNIHGEASLKGWAKVVEEVHAAGGKIVPQLWHVGMARTI-GELPNAD 125 V P L + + + + + N Sbjct: 124 DYLDLYQVHWPQRPTNCFGK-LGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNET 182 Query: 126 ALPVGPSGLNLAGEQITEPMTKEEISGIVXXXXXXXXXXXXVGFDGIELHGAHGYLIDQF 185 A V + +T + ++ L + Sbjct: 183 AFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGTLT 242 Query: 186 FWEKTNKRTDEYGGDLEARTTFAVEIIDACRRAVGPDFPIILRFSQWKAGDYAAKLAQTP 245 + L +R T A D + + Sbjct: 243 GKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQPFV 302 Query: 246 EELARFLTPLSNAGVDIFHCSTRRFWLPEFEGSELNLAGWTKKITGKPTITVGSVGLSSE 305 Sbjct: 303 362 Query: 306 FGSAVTEQNE---EDNLDRLMEKLEKAEFDLVAVGRALISDPAWPAKVQSGRKDEIIAFT 362 Sbjct: 363 422 Query: 363 PEATRTL 369 Sbjct: 423 429 >SMa2291 [C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family Length = 346 Score = 185 bits (469), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 21/340 (6%), Positives = 53/340 (15%), Gaps = 32/340 (9%) Query: 21 LTLANRIVMAPMTRV-FSPDGVPGEDVAAYYRRRAEGGVGLIVTEGTAINHPSAVSHQNI 79 G ++ H + Sbjct: 20 TMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSR 79 Query: 80 PNIHGEASLKGWAKVVEEVHAAGGKIVPQLWHVGMARTIGELPNADALPVGPSGLNLAGE 139 + + + G ++ ++ + + + D + ++ Sbjct: 80 EKLIIASKVSGPSRNNDKGIRPDQALDRKNIR-EALHDSLKRLQTDY--LDLYQVHWPQR 136 Query: 140 QIT-----------EPMTKEEISGIVXXXXXXXXXXXXV-GFDGIELHGAHGYLIDQFFW 187 + + G G YL Sbjct: 137 PTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFGVMRYLHLADKH 196 Query: 188 EKTNKRTDEYGGDLEARTTFAVEIIDACRRAVGPDFPIILRFSQWKAGDYAAKLAQTPEE 247 + T + L R+ + V L F Sbjct: 197 DLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGTLTGKYLNGAKPAGARN 256 Query: 248 LARFLTPLSNAGVDIFHCSTRRFWLPEFEGSELNLAGWTKKITGKPTITVGSVGLSSEFG 307 + + +A + P + +G ++ Sbjct: 257 TLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQ--PFVASTLLGATTMDQ 314 Query: 308 SAVTEQNEEDNLDRLMEKLEKAEFDLVAVGRALISDPAWP 347 +E +L A I Sbjct: 315 LK--------------TNIESLHLELSEDVLAEIEAVHQV 340 >mll2211 [C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family Length = 346 Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 8/225 (3%), Positives = 29/225 (12%), Gaps = 20/225 (8%) Query: 12 LFAPFRAGSLTLANRIVMAPMTRVFSPDGVPGEDVAAYYRRRAEGGVGLIVTEGTAINHP 71 P + ++ M + D D A + Sbjct: 4 HRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLI--DVAEMYPVPPRPE- 60 Query: 72 SAVSHQNIPNIHGEASLKGWAKVVEEVHAAGGKIVPQLWHVGMARTIGELPNADALPVGP 131 + + ++ + + + A + Sbjct: 61 TQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQA-LDRKNIREALHDSLK 119 Query: 132 SGLNL-----------AGE--QITEP--MTKEEISGIVXXXXXXXXXXXXV-GFDGIELH 175 T + + I + Sbjct: 120 RLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVS 179 Query: 176 GAHGYLIDQFFWEKTNKRTDEYGGDLEARTTFAVEIIDACRRAVG 220 + + ++ + Sbjct: 180 NETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQ 224 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.136 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 28,407,996 Number of extensions: 1143434 Number of successful extensions: 2699 Number of sequences better than 1.0e-05: 83 Number of HSP's gapped: 2484 Number of HSP's successfully gapped: 83 Length of query: 370 Length of database: 38,378,431 Length adjustment: 108 Effective length of query: 262 Effective length of database: 25,922,359 Effective search space: 6791658058 Effective search space used: 6791658058 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 116 (49.3 bits)