BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0504.0048.p
         (57 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_ydjF [KT] COG1842 Phage shock protein A (IM30), suppresses si...    61   4e-10
Z2808 [KG] COG1349 Transcriptional regulators of sugar metabolism      61   4e-10
ECs2479 [KG] COG1349 Transcriptional regulators of sugar metabolism    61   4e-10
BS_glcR [KG] COG1349 Transcriptional regulators of sugar metabolism    55   3e-08
BH0847 [KG] COG1349 Transcriptional regulators of sugar metabolism     53   1e-07

>BS_ydjF [KT] COG1842 Phage shock protein A (IM30), suppresses
           sigma54-dependent transcription
          Length = 217

 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 0/57 (0%), Positives = 0/57 (0%)

Query: 1   MLRQAQKVVLLADHTKFDKTAFTRLVELSSIDVLITDRRPAESWLTRLAEENIEVLY 57
                                                                    
Sbjct: 196                                                           252


>Z2808 [KG] COG1349 Transcriptional regulators of sugar metabolism
          Length = 252

 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 39/57 (68%)

Query: 1   MLRQAQKVVLLADHTKFDKTAFTRLVELSSIDVLITDRRPAESWLTRLAEENIEVLY 57
           M+RQA +V LL DH+KFD+ AF +L + S I+ +ITD+ P   W+    + NI++++
Sbjct: 196 MIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDKSPGAEWIAFCKDNNIQLVW 252


>ECs2479 [KG] COG1349 Transcriptional regulators of sugar metabolism
          Length = 252

 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 39/57 (68%)

Query: 1   MLRQAQKVVLLADHTKFDKTAFTRLVELSSIDVLITDRRPAESWLTRLAEENIEVLY 57
           M+RQA +V LL DH+KFD+ AF +L + S I+ +ITD+ P   W+    + NI++++
Sbjct: 196 MIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDKSPGAEWIAFCKDNNIQLVW 252


>BS_glcR [KG] COG1349 Transcriptional regulators of sugar metabolism
          Length = 258

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 39/56 (69%)

Query: 1   MLRQAQKVVLLADHTKFDKTAFTRLVELSSIDVLITDRRPAESWLTRLAEENIEVL 56
           M++QA++V+ LADH+K   T+F +  EL+ ID+LITDR P +++   L    +E+L
Sbjct: 194 MIQQAKQVIALADHSKLGSTSFYQYAELNEIDLLITDRLPNQAFCDLLDRNGVELL 249


>BH0847 [KG] COG1349 Transcriptional regulators of sugar metabolism
          Length = 259

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 39/56 (69%)

Query: 1   MLRQAQKVVLLADHTKFDKTAFTRLVELSSIDVLITDRRPAESWLTRLAEENIEVL 56
           ML+QA++ ++LADH+K   T + +L +LS IDVLITDR P  S+   L +  +E++
Sbjct: 196 MLQQAKQKIVLADHSKIGVTDYFKLADLSDIDVLITDRSPPYSFHQLLQQYGVELV 251


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.322    0.133    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 3,456,660
Number of extensions: 74030
Number of successful extensions: 261
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 8
Length of query: 57
Length of database: 38,378,431
Length adjustment: 30
Effective length of query: 27
Effective length of database: 34,918,411
Effective search space: 942797097
Effective search space used: 942797097
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 109 (46.6 bits)