BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0504.0031.p (527 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH3683 [G] COG3507 Beta-xylosidase 578 e-165 CAC3452 [G] COG3507 Beta-xylosidase 439 e-123 CC0989 [G] COG3507 Beta-xylosidase 434 e-121 BS_xynB [G] COG3507 Beta-xylosidase 432 e-121 CC2802 [G] COG3507 Beta-xylosidase 217 3e-56 >BH3683 [G] COG3507 Beta-xylosidase Length = 528 Score = 578 bits (1491), Expect = e-165, Method: Compositional matrix adjust. Identities = 283/526 (53%), Positives = 354/526 (67%), Gaps = 3/526 (0%) Query: 1 MAPTIVNPVLKGFHPDPSFLRVGDDYYIATSTFEWFPGVEIHHSRDLVHWRPLTRVLTES 60 M I NP+L GFHPDPS +RVGDDYYIATSTFEWFPGV IHHSRDL HWR ++ LT + Sbjct: 1 MVNRIQNPILPGFHPDPSIVRVGDDYYIATSTFEWFPGVRIHHSRDLKHWRFVSSPLTRT 60 Query: 61 SQVDLRGNSSSGSIWAPALSYDNGIYYLLFTDVKSRKSAYKDLHNYLITAADILGPWSDP 120 SQ+D++GN +SG IWAP LSY +G +YL++TDVK A+KD HNYL+TA +I GPWSDP Sbjct: 61 SQLDMKGNMNSGGIWAPCLSYHDGTFYLIYTDVKQWHGAFKDAHNYLVTAQNIEGPWSDP 120 Query: 121 VRLNGSGFDPFLFHDADGTQWLLNMRWDFRKQHSNFSGIIMQQYDPKSRSLTGPVHELYK 180 + LN SGFDP LFHD DG +WL+NM WD+RK + F+GII+Q+Y + L GPV +YK Sbjct: 121 IYLNSSGFDPSLFHDDDGRKWLVNMIWDYRKGNHPFAGIILQEYSEAEQKLVGPVKNIYK 180 Query: 181 GTPAGVTEGPQLYQRNGYYYLLVAEGGTGINHMVTLARSRSRTGPYETDPDYPVMTTAHD 240 GT +TEGP LY+++GYYYLLVAEGGT H TLARS+S GPYETDP YP++T+ Sbjct: 181 GTDIQLTEGPHLYKKDGYYYLLVAEGGTEYEHAATLARSQSIDGPYETDPSYPLVTSTGQ 240 Query: 241 LAFAFQQAGHGSLVETQSGEWYMAHLCTRPIPGTGTMNPLGRETAIQRVVWTDDGWLRLA 300 A Q+AGHGSLVETQ+GEWY+AHLC RP+ G LGRETAIQ+V WT+DGWLR+ Sbjct: 241 PELALQKAGHGSLVETQNGEWYLAHLCGRPL--KGKYCTLGRETAIQKVNWTEDGWLRIE 298 Query: 301 HGGKLPALAVEGPDLEPHPFPEWPERDDFDYDTLGYPYQSLRVPFDPSWVSLTERPGFLR 360 GG P V PDL HPF + PE DDFD L + + +LR+P DPSW SL ERPG LR Sbjct: 299 DGGNHPLREVTAPDLPEHPFEKEPELDDFDAPQLHHQWNTLRIPADPSWCSLEERPGHLR 358 Query: 361 LRGRESLASLHDQSLIGRPIQHFACTVSTCLEFEPDTFLQMAGLVLXXXXXXXXXLRVTA 420 LRG ESL S+H QSL+ R Q F C V T LE++P++F MAGLV+ L VT Sbjct: 359 LRGMESLTSVHSQSLVARRQQSFHCEVETKLEYQPESFQHMAGLVIYYDTEDHVYLHVTW 418 Query: 421 DEIRGVSLGVVMCRAGKYDEITSMQISVKAWDRYYLKAAIDGRDIMFYASPDGEI-WTAM 479 E +G L ++ + G YDE+ + I + YLK I + Y +GE W + Sbjct: 419 HEEKGKCLQIIQTKGGNYDELLASPIPLAEEKAVYLKGRIHRETMHLYFKQEGEAEWQPV 478 Query: 480 CTPLDFGTLSDEYGGKLGFTGAYAGICVQDLDQQAKKAYFDYFEYR 525 +D +SD+ ++ FTG + G+ QDL K A FDYF Y+ Sbjct: 479 GPTIDVTHMSDDSAKQVRFTGTFVGMATQDLSGTKKPADFDYFRYK 524 >CAC3452 [G] COG3507 Beta-xylosidase Length = 533 Score = 439 bits (1130), Expect = e-123, Method: Compositional matrix adjust. Identities = 239/536 (44%), Positives = 318/536 (59%), Gaps = 21/536 (3%) Query: 5 IVNPVLKGFHPDPSFLRVGDDYYIATSTFEWFPGVEIHHSRDLVHWRPLTRVLTESSQVD 64 I NP+L+GF+PDPS R DYYIATSTFEWFPGV+IHHS+DLV+W + L +S +D Sbjct: 2 IKNPILRGFNPDPSICRADTDYYIATSTFEWFPGVQIHHSKDLVNWHLVAHPLNRTSLLD 61 Query: 65 LRGNSSSGSIWAPALSYDNGIYYLLFTDVKSRKSAYKDLHNYLITAADILGPWSDPVRLN 124 ++GN +SG IWAP LSY +G ++L++TDVK +KD HNYL T + G WSDP+ LN Sbjct: 62 MKGNPNSGGIWAPDLSYHDGKFWLIYTDVKVTDGMWKDCHNYLTTCESVDGVWSDPITLN 121 Query: 125 GSGFDPFLFHDADGTQWLLNMRWDFRKQHSNFSGIIMQQYDPKSRSLTGPVHELYKGTPA 184 GSGFD LFHD DG ++L+NM WD R + NF GI++Q+Y K + L G +YKGT Sbjct: 122 GSGFDASLFHDNDGKKYLVNMYWDQRTYNHNFYGIVLQEYSDKEKKLIGKAKIIYKGTDI 181 Query: 185 GVTEGPQLYQRNGYYYLLVAEGGTGINHMVTLARSRSRTGPYETDPDYPVMTTAHDLAFA 244 TEGP +Y YYYL AEGGT H T+ARS++ GPYE DP+YP++T+ HD + Sbjct: 182 KYTEGPHIYHIGDYYYLFTAEGGTTYEHSETVARSKNIDGPYEIDPEYPLLTSWHDPRNS 241 Query: 245 FQQAGHGSLVETQSGEWYMAHLCTRPIPGTGT-------MNPLGRETAIQRVVWTDDGWL 297 Q+ GH SLV T + EWY+AHL RP+P PLGRET+IQR+ W D+ W Sbjct: 242 LQKCGHASLVHTHTDEWYLAHLVGRPLPVGNQPVLEQRGYCPLGRETSIQRIEWVDN-WP 300 Query: 298 RLAHGGKLPALAVEGPDLEPHPFPEWP----ERDDFDYDTLGYPYQSLRVPFDPSWVSLT 353 R+ GGK ++ VE P + P +W E+D+FD D L +QSLR+P + SL Sbjct: 301 RVV-GGKQGSVNVEAPKI---PEVKWEKTYDEKDNFDSDKLNINFQSLRIPLTENIASLK 356 Query: 354 ERPGFLRLRGRESLASLHDQSLIGRPIQHFACTVSTCLEFEPDTFLQMAGLVLXXXXXXX 413 + G LRL G+ESL S Q+ I R Q F ST + F PDTF Q AGL Sbjct: 357 AKKGNLRLYGKESLTSTFTQAFIARRWQSFKFDASTSVSFSPDTFQQAAGLTCYYNTENW 416 Query: 414 XXLRVTADEIRGVSLGVVMCRAGKYD-EITSMQISV-KAWDRYYLKAAIDGRDIMFYASP 471 ++VT +E +G + +V C +D + S I + K + +LK + + S Sbjct: 417 STIQVTWNEDKGRVIDIVCCDNFHFDMPLKSNVIPIPKDVEYIHLKVEVRVETYQYSYSF 476 Query: 472 DGEIWTAMCTPLDFGTLSDEY--GGKLGFTGAYAGICVQDLDQQAKKAYFDYFEYR 525 DG W+ + + LSD+Y GG FTGA+ GI D+ K A FDYF Y+ Sbjct: 477 DGINWSKVPAIFESRKLSDDYVQGGGF-FTGAFVGINCIDITGNNKPADFDYFCYK 531 >CC0989 [G] COG3507 Beta-xylosidase Length = 546 Score = 434 bits (1115), Expect = e-121, Method: Compositional matrix adjust. Identities = 241/535 (45%), Positives = 317/535 (59%), Gaps = 18/535 (3%) Query: 5 IVNPVLKGFHPDPSFLRVGDDYYIATSTFEWFPGVEIHHSRDLVHWRPLTRVLTESSQVD 64 I NPVL+GF+PDPS +RVG+DYYIATSTFEWFPGV+IHHSRDL +WR + R L SQ++ Sbjct: 6 IRNPVLRGFNPDPSIVRVGEDYYIATSTFEWFPGVQIHHSRDLRNWRLIGRPLRRPSQLN 65 Query: 65 LRGNSSSGSIWAPALSYDNGIYYLLFTDVK---------SRKSAYKDLHNYLITAADILG 115 + G+ +WAP L++ +G ++L+FTDVK + ++ +D HNYL+T I G Sbjct: 66 MMGDPDGCGVWAPCLTHADGRFWLIFTDVKRYGRTTVGGASGASLRDFHNYLVTCETIDG 125 Query: 116 PWSDPVRLNGSGFDPFLFHDADGTQWLLNMRWDFRKQHSNFSGIIMQQYDPKSRSLTGPV 175 WSDP+ LN SGFDP LFHD DG +WL+N WD R + F+GI++Q + + L G Sbjct: 126 DWSDPIHLNSSGFDPSLFHDDDGRKWLVNQLWDHRPGRNRFAGIVLQAFSVAEQRLVGER 185 Query: 176 HELYKGTPAGVTEGPQLYQRNGYYYLLVAEGGTGINHMVTLARSRSRTGPYETDPDYPVM 235 +++GT G+TE P LY+R+G+YYLL AEGGTG H TLARSR+ GPYE PD ++ Sbjct: 186 KVIFEGTAIGLTEAPHLYKRDGWYYLLTAEGGTGWGHAATLARSRAIDGPYELHPDTYLL 245 Query: 236 TTAHDLAFAFQQAGHGSLVETQSGEWYMAHLCTRPIPGTGTMNPLGRETAIQRVVWTDDG 295 T Q+AGHG L ET GE Y+A+LC RP+PG G LGRETAIQ++ W DG Sbjct: 246 TARDRPHAPLQRAGHGDLFETADGETYIAYLCGRPLPGRGRCV-LGRETAIQKLTWGADG 304 Query: 296 WLRLAHGGKLPALAVEGPDLEPHPFPEWPERDDFDYDTLGYPYQSLRVPFDPSWVSLTER 355 W R G P L G L P+P P R+DFD TL +Q LR P+ + SLT R Sbjct: 305 WPRTLDGSGDPTLETPGAGLVDQPWPTTPVREDFDGTTLPIDFQWLRTPYPETIFSLTAR 364 Query: 356 PGFLRLRGRESLASLHDQSLIGRPIQHFACTVSTCLEFEPDTFLQMAGLVLXXXXXXXXX 415 PGFLRL GRESL S+ Q+L+ R Q + +T L+FEP F Q AGLV Sbjct: 365 PGFLRLYGRESLGSVFTQALVARRQQAHCYSAATRLDFEPAHFQQAAGLVCYYNGSKLHY 424 Query: 416 LRVTADEIRGVSLGVVMCR--AGKYDEITS-MQISVKAWDRYYLKAAIDGRDIMFYASPD 472 L VT D+ G L V+ C + + D T+ + + D L+ +D + F Sbjct: 425 LHVTHDDEAGKHLRVMTCTPDSPQADSFTAPIPLGAGPVD---LRVEVDFERLRFGFRQA 481 Query: 473 GEIWTAMCTPLDFGTLSDEYG--GKLGFTGAYAGICVQDLDQQAKKAYFDYFEYR 525 G W + D LSDE G FTGA+ G+ QD+ A A FD+F+Y+ Sbjct: 482 GGDWRWLPEVFDASILSDEATAPGAPNFTGAFVGMACQDMSGMATAADFDWFDYQ 536 >BS_xynB [G] COG3507 Beta-xylosidase Length = 533 Score = 432 bits (1110), Expect = e-121, Method: Compositional matrix adjust. Identities = 234/532 (43%), Positives = 316/532 (59%), Gaps = 14/532 (2%) Query: 5 IVNPVLKGFHPDPSFLRVGDDYYIATSTFEWFPGVEIHHSRDLVHWRPLTRVLTESSQVD 64 I NPVLKGF+PDPS R G+DYYIA STFEWFPGV+IHHS+DLV+W + L SQ+D Sbjct: 3 ITNPVLKGFNPDPSICRAGEDYYIAVSTFEWFPGVQIHHSKDLVNWHLVAHPLQRVSQLD 62 Query: 65 LRGNSSSGSIWAPALSYDNGIYYLLFTDVKSRKSAYKDLHNYLITAADILGPWSDPVRLN 124 ++GN +SG +WAP LSY +G ++L++TDVK A+KD HNYL+T I G WS+P++LN Sbjct: 63 MKGNPNSGGVWAPCLSYSDGKFWLIYTDVKVVDGAWKDCHNYLVTCETINGDWSEPIKLN 122 Query: 125 GSGFDPFLFHDADGTQWLLNMRWDFRKQHSNFSGIIMQQYDPKSRSLTGPVHELYKGTPA 184 SGFD LFHD DG ++LLNM WD R +F GI++Q+Y K + L G +++GT Sbjct: 123 SSGFDASLFHDTDGKKYLLNMLWDHRIDRHSFGGIVIQEYSDKEQKLIGKPKVIFEGTDR 182 Query: 185 GVTEGPQLYQRNGYYYLLVAEGGTGINHMVTLARSRSRTGPYETDPDYPVMTTAHDLAFA 244 +TE P LY YYYLL AEGGT H T+ARS + GPYE PD P++T+ HD Sbjct: 183 KLTEAPHLYHIGNYYYLLTAEGGTRYEHAATIARSANIEGPYEVHPDNPILTSWHDPGNP 242 Query: 245 FQQAGHGSLVETQSGEWYMAHLCTRPI-PGTGTM------NPLGRETAIQRVVWTDDGWL 297 Q+ GH S+V+T + EWY+AHL RPI P ++ PLGRETAIQ++ W D+ W Sbjct: 243 LQKCGHASIVQTHTDEWYLAHLTGRPIHPDDDSIFQQRGYCPLGRETAIQKLYWKDE-WP 301 Query: 298 RLAHGGKLPALAVEGPDLEPHPF-PEWPERDDFDYDTLGYPYQSLRVPFDPSWVSLTERP 356 + GGK +L V+ P + F +PE D+F+ TL +Q+LR+PF SLT+ P Sbjct: 302 YVV-GGKEGSLEVDAPSIPETIFEATYPEVDEFEDSTLNINFQTLRIPFTNELGSLTQAP 360 Query: 357 GFLRLRGRESLASLHDQSLIGRPIQHFACTVSTCLEFEPDTFLQMAGLVLXXXXXXXXXL 416 LRL G ESL S Q+ + R Q T +EF P+ F Q AGLV L Sbjct: 361 NHLRLFGHESLTSTFTQAFVARRWQSLHFEAETAVEFYPENFQQAAGLVNYYNTENWTAL 420 Query: 417 RVTADEIRGVSLGVVMCRAGKYDEITSMQISVKAWDRY-YLKAAIDGRDIMFYASPDGEI 475 +VT DE G L + +C + + + +I + +Y YL+ I+ ++ S + E Sbjct: 421 QVTHDEELGRILELTICDNFSFSQPLNNKIVIPREVKYVYLRVNIEKDKYYYFYSFNKED 480 Query: 476 WTAMCTPLDFGTLSDEY--GGKLGFTGAYAGICVQDLDQQAKKAYFDYFEYR 525 W + L+ LSD+Y GG FTGA+ G+ QD A F YF Y+ Sbjct: 481 WHKIDIALESKKLSDDYIRGGGF-FTGAFVGMQCQDTGGNHIPADFRYFRYK 531 >CC2802 [G] COG3507 Beta-xylosidase Length = 548 Score = 217 bits (553), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 168/531 (31%), Positives = 246/531 (46%), Gaps = 44/531 (8%) Query: 7 NPVLKGFHPDPSFLRVGDDYYIATSTFEWFPGVEIHHSRDLVHWRPLTRVLTESSQVDLR 66 NPV++GF+PDPS R G D+Y+ STF WFPG+ + HS DLVHW + + +D + Sbjct: 37 NPVVQGFYPDPSVTRAGKDFYLVNSTFAWFPGLPVFHSTDLVHWEQIGNAIDRPGMLDFK 96 Query: 67 GNSSSGSIWAPALSYDNGIYYLLFTDVKSRKSAYKDLHNYLITAADILGPWSDPVRL-NG 125 S +++APA+ G++Y+L T V NYLITA D GPWSDPV L Sbjct: 97 RLGLSRAVFAPAIQAHQGMFYILNTCVDCGG-------NYLITAKDPKGPWSDPVWLPKV 149 Query: 126 SGFDPFLF---HDADGTQWLLNM-RWDFRKQHSNFSGIIMQQYDPKSRSLTGPVHELY-K 180 G DP +F D G W++N ++ + + +YDPK+++ GP L K Sbjct: 150 GGIDPSIFFDDEDGGGRVWIVNNDGPPGPPEYPGHRALWIHEYDPKTQTTVGPATLLLDK 209 Query: 181 GTPAGVT----EGPQLYQRNGYYYLLVAEGGTGINHMVTLARSRSRTGPYETDPDYPVMT 236 G EGP + +++G+YYL AEGGT H + RS+S TGPY + P++T Sbjct: 210 GVDPATKPIWPEGPHILKKDGWYYLTAAEGGTAEGHSQVVLRSKSVTGPYVPYTNNPILT 269 Query: 237 T---AHDLAFAFQQAGHGSLVETQSGEWYMAHLCTRPIPGTGTMNPLGRETAIQRVVWTD 293 D AGH +V+T G+W+ L RP G N GRET + V W Sbjct: 270 QRDLPRDRPLPITSAGHADIVDTPDGKWWATFLAVRPY-GDDLYN-TGRETFLLPVEWK- 326 Query: 294 DGWLRLAHGGKLPALAVEGPDL-----EPHPFPEWPERDDFDYDTLGYPYQSLRVPFDPS 348 DGW + GK + P L P P + + F+ L + ++R+P Sbjct: 327 DGWPVILENGKTIPYVADAPKLPALKTAPTSGP-FKAAETFEGPELPMSWMTMRIPSKRW 385 Query: 349 WVSLTERPGFLRLRGRESLASLHDQ-SLIGRPIQHFACTVSTCLEFEPDTFLQMAGLVLX 407 W + + G L L R+ H+Q S+ R QH +VST + F+P AGLV Sbjct: 386 W---SVKDGTLSLEARKDRVGGHEQPSIWARRQQHMNASVSTTVRFDPKADGDKAGLVAV 442 Query: 408 XXXXXXXXLRVTADEIRGVSLGVVMCRAGKYDE-----ITSMQISVKAWDRYYLKAAIDG 462 + + + G +L V R D + +S+K+ LK A G Sbjct: 443 QNDDFYWFVGLV--QAGGKTLVRVEKRTSSKDPLDGAVVAEKPVSLKSGQSLDLKIAARG 500 Query: 463 RDIMF-YASPDGEIWTAMCTPLDFGTLSDEYGGKLGFTGAYAGICVQDLDQ 512 + F YA+ G+ W + D TLS + G GF G G+ +++ Sbjct: 501 GALDFAYATAPGQ-WQTLKADADGTTLSTKVAG--GFVGTMLGVYAHGVEE 548 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.139 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 43,220,043 Number of extensions: 1884586 Number of successful extensions: 4221 Number of sequences better than 1.0e-05: 8 Number of HSP's gapped: 4189 Number of HSP's successfully gapped: 8 Length of query: 527 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 416 Effective length of database: 25,576,357 Effective search space: 10639764512 Effective search space used: 10639764512 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 118 (50.1 bits)