BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0504.0025.p
         (83 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

all4972 [K] COG1695 Predicted transcriptional regulators               61   5e-10
MT1213 [K] COG1695 Predicted transcriptional regulators                55   3e-08
Rv1176c [K] COG1695 Predicted transcriptional regulators               55   4e-08
alr2018 [K] COG1695 Predicted transcriptional regulators               54   7e-08
CAC3370 [K] COG1695 Predicted transcriptional regulators               49   3e-06

>all4972 [K] COG1695 Predicted transcriptional regulators
          Length = 179

 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 44/73 (60%)

Query: 2  TGYDLKKLIQESSFLYWSGNNNQIYKALVELLNAGFVTNEVRHQDSSPSKKIYTITSSGL 61
          +GYDL K+  ES   +W  +  QIY+ L +L +AG + +EV  ++    KK+Y+IT  G 
Sbjct: 17 SGYDLSKVFSESVGYFWQASQQQIYRELGKLESAGLIVSEVIPREGRLDKKVYSITEQGK 76

Query: 62 AELRKWVVAPPEP 74
           +L +W+  P EP
Sbjct: 77 QQLIEWMHKPSEP 89


>MT1213 [K] COG1695 Predicted transcriptional regulators
          Length = 247

 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 38/73 (52%)

Query: 2   TGYDLKKLIQESSFLYWSGNNNQIYKALVELLNAGFVTNEVRHQDSSPSKKIYTITSSGL 61
           +GY+L +    S   +W+  + QIY+ L  + N  +V      Q   P KK+Y I+ SG 
Sbjct: 75  SGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQHGRPDKKVYAISDSGR 134

Query: 62  AELRKWVVAPPEP 74
           AEL +W+  P  P
Sbjct: 135 AELARWIAEPLSP 147


>Rv1176c [K] COG1695 Predicted transcriptional regulators
          Length = 189

 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 38/73 (52%)

Query: 2  TGYDLKKLIQESSFLYWSGNNNQIYKALVELLNAGFVTNEVRHQDSSPSKKIYTITSSGL 61
          +GY+L +    S   +W+  + QIY+ L  + N  +V      Q   P KK+Y I+ SG 
Sbjct: 17 SGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQHGRPDKKVYAISDSGR 76

Query: 62 AELRKWVVAPPEP 74
          AEL +W+  P  P
Sbjct: 77 AELARWIAEPLSP 89


>alr2018 [K] COG1695 Predicted transcriptional regulators
          Length = 359

 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 2/84 (2%), Positives = 10/84 (11%), Gaps = 3/84 (3%)

Query: 1   MTGYDLKKLIQESSFLY-WSGNNNQIYKALVELLNAGFVTNEVRHQDSSPSKKIYTITSS 59
                 +            +     +                      +  +      +S
Sbjct: 53  DAFGVARLEEALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEAS 112

Query: 60  GLAELRKWVVAPPEPPXXXXRRPF 83
               +  W+               
Sbjct: 113 LDEPVTVWMKLD--TGMHRLGVRP 134


>CAC3370 [K] COG1695 Predicted transcriptional regulators
          Length = 175

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 1  MTGYDLKKLIQESSFLYWSGNNNQIYKALVELLNAGFVTNEVRHQDSSPSKKIYTITSSG 60
          +TGYD+ K        +W   ++QIY  L +L + G ++ +   Q     KK+YTIT +G
Sbjct: 17 LTGYDIAKEFNSGLVEFWYAKHSQIYPELKKLTDEGLISYKTVIQGEKLEKKLYTITENG 76

Query: 61 LAELRKWVV--APPEP 74
             L+KW+    P EP
Sbjct: 77 KEALQKWLKKDEPLEP 92


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.315    0.132    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 5,866,939
Number of extensions: 160161
Number of successful extensions: 344
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 344
Number of HSP's successfully gapped: 8
Length of query: 83
Length of database: 38,378,431
Length adjustment: 53
Effective length of query: 30
Effective length of database: 32,265,729
Effective search space: 967971870
Effective search space used: 967971870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 109 (46.6 bits)