BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0504.0021.p (336 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin0760 [G] COG1175 ABC-type sugar transport systems, permease c... 189 5e-48 BS_yurN [G] COG1175 ABC-type sugar transport systems, permease c... 183 3e-46 slr1202 [G] COG1175 ABC-type sugar transport systems, permease c... 183 4e-46 alr0738 [G] COG1175 ABC-type sugar transport systems, permease c... 183 4e-46 lin0218 [G] COG1175 ABC-type sugar transport systems, permease c... 171 2e-42 >lin0760 [G] COG1175 ABC-type sugar transport systems, permease components Length = 296 Score = 189 bits (480), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 105/278 (37%), Positives = 174/278 (62%), Gaps = 3/278 (1%) Query: 50 QSYALLFILPSFLIYTLFVIVPTVGSIYLSFTSWDGISEDVRYIGFANFAEIWQSPRVHN 109 Q A LFI L+ +F+I+P ++++SFT +D I +IGF N+ ++++ P Sbjct: 14 QRMAYLFIALPVLLLAIFMILPIGMALFVSFTDYD-IVNSPNWIGFDNYIKMFRDPYFLI 72 Query: 110 ALKNTLVMTVSLVLLENIAAILLAVLVDKVRWFRNLFRSVFYFPTLLSGIVMGFVWAMIL 169 +LKNT++ T V L +A++ A+L++ + LFR+ FY P L S + +W +L Sbjct: 73 SLKNTIIYTALFVPLGLVASLGAAILINMNKKGAGLFRTFFYVPVLCSTVATATIWYWLL 132 Query: 170 NYNFGVFNQILDAIGLGSWVVDWLGNPKYAMISIILSTVWKGAGYYMIIYLAGLQGIPAE 229 N +G+ N++L G+ WL + +AM +I++ +VW G M+I+LAGLQGIPA Sbjct: 133 NPQYGLINRVLGWFGING--PAWLYDSNWAMFAIVMMSVWMTFGTNMMIFLAGLQGIPAN 190 Query: 230 LNEAASIDGASGFQQFRHITFPLLAGSMTVCLVLSMISALKIFDQIAVMTDGGPGFETET 289 L EA+ I+GAS ++ FR++T+P L+ + + + +I+A ++FDQ V+T GGPG T T Sbjct: 191 LYEASKIEGASRWKTFRYVTWPSLSRTTFLVTTMLIINAFQVFDQAYVLTKGGPGNSTIT 250 Query: 290 LTYIIYKVGFGELRQGFGTALAMVLFLIIMLITVIQVK 327 L Y IY GFG L+ G+ +A++ VLFLII++ ++I ++ Sbjct: 251 LVYYIYNEGFGGLKMGYASAISFVLFLIILVFSIINMR 288 >BS_yurN [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 183 bits (465), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 97/278 (34%), Positives = 164/278 (58%), Gaps = 3/278 (1%) Query: 55 LFILPSFLIYTLFVIVPTVGSIYLSFTSWDGISEDVRYIGFANFAEIWQSPRVHNALKNT 114 LF++P+ L++ LFV +P +++LS W S + +IG N+ E++ P + AL N Sbjct: 11 LFLVPA-LVFLLFVYIPIFENVFLSLFQWSSFSPEKTFIGLKNYVELFHDPVFYQALTNN 69 Query: 115 LVMTVSLVLLENIAAILLA-VLVDK-VRWFRNLFRSVFYFPTLLSGIVMGFVWAMILNYN 172 ++ V ++ + ++LA VL DK VR + FR+VF+ P ++S V+ ++ I N Sbjct: 70 VLYAVISIVCQVFGGLILAAVLEDKLVRKWSPFFRTVFFLPVVISMTVIALLFDFIYNPE 129 Query: 173 FGVFNQILDAIGLGSWVVDWLGNPKYAMISIILSTVWKGAGYYMIIYLAGLQGIPAELNE 232 G+ NQ+L AIGL WLG+ AM+S+I + W+ GY ++Y+ +Q IP EL E Sbjct: 130 TGLLNQLLQAIGLDQLTRAWLGDDSTAMLSVIFVSQWQSVGYIAMLYIVSIQKIPDELYE 189 Query: 233 AASIDGASGFQQFRHITFPLLAGSMTVCLVLSMISALKIFDQIAVMTDGGPGFETETLTY 292 AA +DGA QQF HIT P V +V+++ A +F++ ++T GGPG +E L+ Sbjct: 190 AARLDGAGKIQQFFHITVPQTKEMSFVAVVMTLTGAFTVFNEPYILTGGGPGKASEVLST 249 Query: 293 IIYKVGFGELRQGFGTALAMVLFLIIMLITVIQVKFLR 330 +YK F + G+ +A+A V+ +I + ++++Q+KF + Sbjct: 250 FLYKSAFTKDMMGYASAIATVVLIITLALSLMQMKFFK 287 >slr1202 [G] COG1175 ABC-type sugar transport systems, permease components Length = 298 Score = 183 bits (464), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 107/286 (37%), Positives = 169/286 (59%), Gaps = 5/286 (1%) Query: 45 KKRKWQSYA--LLFILPSFLIYTLFVIVPTVGSIYLSFTSWD-GISEDVRYIGFANFAEI 101 R+W A LF+LP+ ++ V P + + LSFT ++ +++ ++G ANF + Sbjct: 6 SDRRWPRGATPYLFLLPALVMLGATVFYPALQAFSLSFTQYELDLTKAPAWVGLANFERL 65 Query: 102 WQSPRVHNALKNTLVMTVSLVLLENIAAILLAVLVDKVRWFRNLFRSVFYFPTLLSGIVM 161 W+ ++TL+ V +V L + + LA+LV++ FR +Y P + S +V Sbjct: 66 WRDRVFWLTFRHTLLYLVGVVPLLIMLPLGLAILVNQKLRGITWFRMAYYTPVITSIVVA 125 Query: 162 GFVWAMILNYNFGVFNQILDAIGLGSWVVDWLGNPKYAMISIILSTVWKGAGYYMIIYLA 221 G W + N G+ NQIL +G + WL +P A+ S+++ TVWKG GYYM+IYLA Sbjct: 126 GIAWKALYASN-GILNQILALLGFSD-GIPWLTSPNLALWSVMVVTVWKGLGYYMVIYLA 183 Query: 222 GLQGIPAELNEAASIDGASGFQQFRHITFPLLAGSMTVCLVLSMISALKIFDQIAVMTDG 281 GLQ IP EL EA +IDGA G++Q IT PL+ + VLS ISALK+F+++ +MT G Sbjct: 184 GLQAIPQELYEAGAIDGADGWRQHWDITIPLMRPYCFLVGVLSSISALKVFEEVYIMTQG 243 Query: 282 GPGFETETLTYIIYKVGFGELRQGFGTALAMVLFLIIMLITVIQVK 327 GP ++T+ Y +Y+ F +L + +A+ +VLFL+I + +VI +K Sbjct: 244 GPLNASKTVVYYVYERAFQDLEMNYASAIGLVLFLVIFIFSVINLK 289 >alr0738 [G] COG1175 ABC-type sugar transport systems, permease components Length = 359 Score = 183 bits (464), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 18/263 (6%), Positives = 43/263 (16%), Gaps = 8/263 (3%) Query: 71 PTVGSIYLSFTSWDGISEDVRYIGFANFAEIWQSPRVHNALKNTLVMTVSLVLLENIAAI 130 G L ++ + L + + Sbjct: 36 NAYGHGLLETARTLPDADAFGVARLEEALRLRAGGITKPVLLLEGFFDARDLPTISAQHF 95 Query: 131 LLAVLVDKVRWFRNLFRSVFYFPTLLSGIVMGFVWAMILNYNFGVFNQILDAIGLGSWVV 190 AV ++ + + F L V Sbjct: 96 HTAVHNEEQLAALEEASLDEPVTVWMKLDTGMHRLGVRPEQA-EAFYHRLTQCKNVRQPV 154 Query: 191 DWL-------GNPKYAMISIILSTVWKGAGYYMIIYLAGLQGIPAELNEAASIDGASGFQ 243 + + A + G +A GI Sbjct: 155 NIVSHFARADEPKCGATEKQLAIFNTFCEGKPGQRSIAASGGILLWPQSHFDWVRPGIIL 214 Query: 244 QFRHITFPLLAGSMTVCLVLSMISALKIFDQIAVMTDGGPGFETETLTYIIYKVGFGELR 303 G+ C + +++ I + + T Sbjct: 215 YGVSPLEDRSTGADFGCQPVMSLTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGY 274 Query: 304 QGFGTALAMVLFLIIMLITVIQV 326 A +++ + + Sbjct: 275 GDGYPRAAPSGTPVLVNGREVPI 297 >lin0218 [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 171 bits (432), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 95/287 (33%), Positives = 172/287 (59%), Gaps = 4/287 (1%) Query: 46 KRKWQSYALLFILPSFLIYTLFVIVPTVGSIYLSFTSWDGISEDVRYIGFANFAEIWQSP 105 ++K + +F+LP+ L + +F+ +P +GS+ +SFT WD +S + + GF N+ ++ P Sbjct: 6 RKKTLFWLCIFLLPNLLGFLIFIAIPILGSLGISFTDWDLVST-IHFTGFENYKRLFNDP 64 Query: 106 RVHNALKNTLVMTVSLVLLENIAAILLAVLVDKVRWFRNLFRSVFYFPTLLSGIVMGFVW 165 + +NT+ + + I + A+++++ R FR+V++ P + S + + VW Sbjct: 65 EFWKSFRNTITFIIGYLPSVMILGLACALMLNQKIKLRPFFRAVYFLPVITSWVAVSLVW 124 Query: 166 AMILNYNFGVFNQILDAIGLGSWVVDWLGNPKYAMISIILSTVWKGAGYYMIIYLAGLQG 225 + N ++G+ N L IG+ +WL +P+ AMI++I+++ WK G+ M+++L GLQ Sbjct: 125 KWLFNPSYGLINYFLSLIGIAG--PNWLTDPQTAMIAVIITSAWKDIGFVMVLFLGGLQN 182 Query: 226 IPAELNEAASIDGASGFQQFRHITFPLLAGSMTVCLVLSMISALKIFDQIAVMTDGGPGF 285 I EAA++DGAS +Q IT PLL + ++S+I++ ++FDQ+ +MT+GGP Sbjct: 183 ISPSYYEAANMDGASKLRQLFSITIPLLTPTTFFVTIISLINSFQVFDQVMIMTEGGPSG 242 Query: 286 ETETLTYIIYKVGFGELRQGFGTALAMVLFLIIMLITVIQVKFLRKR 332 T TL IY F G+ +A++ +LF++I +IT+IQ K L+KR Sbjct: 243 ATMTLVQNIYNHAFRYFEMGYASAMSWILFIVIFIITIIQNK-LQKR 288 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.329 0.142 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 22,718,913 Number of extensions: 873994 Number of successful extensions: 3317 Number of sequences better than 1.0e-05: 189 Number of HSP's gapped: 3084 Number of HSP's successfully gapped: 191 Length of query: 336 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 229 Effective length of database: 26,037,693 Effective search space: 5962631697 Effective search space used: 5962631697 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 116 (49.3 bits)