BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0504.0016.p
         (247 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH2109 [T] COG4753 Response regulator containing CheY-like recei...   101   1e-21
BH1123 [T] COG4753 Response regulator containing CheY-like recei...    92   7e-19
BH3679 [T] COG4753 Response regulator containing CheY-like recei...    82   1e-15
BH1910 [T] COG4753 Response regulator containing CheY-like recei...    82   1e-15
lin1152 [K] COG2207 AraC-type DNA-binding domain-containing prot...    81   1e-15

>BH2109 [T] COG4753 Response regulator containing CheY-like receiver domain
           and AraC-type DNA-binding domain
          Length = 525

 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/130 (41%), Positives = 79/130 (60%), Gaps = 2/130 (1%)

Query: 114 TFDALKQLFEGVLKRLAGQLTCKLNGKEM-PQLLQVKAFVEEHYAENITLESMAALVYMN 172
           TFD LKQ+F   +   A  +  +L  + M   + +VK ++E HY ENI+L+S+A+L YMN
Sbjct: 392 TFDQLKQVFTKFVLE-AAVIIQELRKENMKSDIYKVKTYIENHYHENISLKSIASLFYMN 450

Query: 173 PYYFSSFFKKHTGQNFKNYVTETRMGHALRLLLQSDLMIYEIAERVGYNNARHFSDMFKK 232
           P Y    FKK  G  FK Y+ + RM  A +LL Q+D+ +YE+AERVG+ +  +F   F+K
Sbjct: 451 PVYMGQLFKKTFGVYFKEYLLKLRMNEAKKLLRQTDMRVYEVAERVGFGSTDYFVTQFEK 510

Query: 233 HFGKLPHEYK 242
                P EY+
Sbjct: 511 INKMTPTEYR 520


>BH1123 [T] COG4753 Response regulator containing CheY-like receiver domain
           and AraC-type DNA-binding domain
          Length = 526

 Score = 92.0 bits (227), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 65/97 (67%)

Query: 147 QVKAFVEEHYAENITLESMAALVYMNPYYFSSFFKKHTGQNFKNYVTETRMGHALRLLLQ 206
           QV  ++E+H AENITL+ +A  +Y++  Y    FKK  G++FKNYVT  RM  A +++ +
Sbjct: 428 QVMIYIEKHLAENITLQDIADELYISRNYLGQIFKKVVGESFKNYVTRLRMEKAKKMIQE 487

Query: 207 SDLMIYEIAERVGYNNARHFSDMFKKHFGKLPHEYKQ 243
            + +IYE++E+VGY N  +F+ MFKK+ G  P +  Q
Sbjct: 488 GNFLIYEVSEKVGYVNPAYFTTMFKKYTGYTPRDLIQ 524


>BH3679 [T] COG4753 Response regulator containing CheY-like receiver domain
           and AraC-type DNA-binding domain
          Length = 257

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 58/93 (62%)

Query: 151 FVEEHYAENITLESMAALVYMNPYYFSSFFKKHTGQNFKNYVTETRMGHALRLLLQSDLM 210
           +++ H  + I L+ +A  V++NP Y S+ FK+ T   F  Y+T  R+ HA  LL+ +D  
Sbjct: 162 YIDAHLDQKIGLKDVAKSVHLNPSYLSALFKEKTNMTFSEYLTRKRLQHAKHLLVSTDRP 221

Query: 211 IYEIAERVGYNNARHFSDMFKKHFGKLPHEYKQ 243
           I +IAE+ GY  A++F  +FK+H G  P +Y++
Sbjct: 222 ISDIAEKCGYQTAKYFIKIFKEHEGMTPTQYRK 254


>BH1910 [T] COG4753 Response regulator containing CheY-like receiver domain
           and AraC-type DNA-binding domain
          Length = 506

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 78/145 (53%), Gaps = 1/145 (0%)

Query: 103 QPLLEKLADAPTFDALKQLFEGVLKRLAGQLTCKLNGKEMPQLLQVKAFVEEHYAENITL 162
           +PL+    D   F+ L  +   + K+L   + C  NG+    L ++ A + + YA+N+ L
Sbjct: 357 EPLVMNAGDIYQFEHLPGIMAFLTKQLKYVIDCMDNGQPDLLLRKMIALIHKDYAKNLRL 416

Query: 163 ESMAALVYMNPYYFSSFFKKHTGQNFKNYVTETRMGHALRLLLQSDLMIYEIAERVGYNN 222
           E++A++   N  Y    FK +TG+ F  Y+ + R+ +  R LLQ    +YE+AE++GY N
Sbjct: 417 ETLASVFNYNRAYLGKLFKNYTGEYFNTYLDKVRIENGKR-LLQKGYKVYEVAEKIGYAN 475

Query: 223 ARHFSDMFKKHFGKLPHEYKQTVKH 247
             +F   FKK+ G  P  +++   H
Sbjct: 476 VDYFHRKFKKYVGVSPSTFRKRHDH 500


>lin1152 [K] COG2207 AraC-type DNA-binding domain-containing proteins
          Length = 183

 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 80/157 (50%), Gaps = 5/157 (3%)

Query: 94  DAGLVDPEDQPLLEKLADAPTFDALKQLFEGVLK----RLAGQLTCKLNGKEMPQLLQVK 149
           D    +P+   LL  L      D L   +    K    +     + K +G E  ++ Q  
Sbjct: 28  DFNKKNPDHSALLHSLETVEVLDVLSDYYTAHEKQKQPKKEAATSSKTSG-EHKEIKQAI 86

Query: 150 AFVEEHYAENITLESMAALVYMNPYYFSSFFKKHTGQNFKNYVTETRMGHALRLLLQSDL 209
            +++++   +ITLE +A  VY++P+Y S  FK     NF NYV E +M +A   L +SD 
Sbjct: 87  RYIKKNIHRSITLEEVANYVYLSPFYLSKLFKNELNINFINYVNEQKMLYAKEQLEKSDW 146

Query: 210 MIYEIAERVGYNNARHFSDMFKKHFGKLPHEYKQTVK 246
            ++ IA+ +G++ A +F  +FKK F   P EY+ ++K
Sbjct: 147 AVHTIAKNLGFSRASYFCKVFKKEFDMTPKEYRDSLK 183


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.134    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 16,761,992
Number of extensions: 620624
Number of successful extensions: 2479
Number of sequences better than 1.0e-05: 107
Number of HSP's gapped: 2471
Number of HSP's successfully gapped: 107
Length of query: 247
Length of database: 38,378,431
Length adjustment: 104
Effective length of query: 143
Effective length of database: 26,383,695
Effective search space: 3772868385
Effective search space used: 3772868385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)