BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0504.0015.p (288 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH2109 [T] COG4753 Response regulator containing CheY-like recei... 111 1e-24 BH0793 [T] COG4753 Response regulator containing CheY-like recei... 102 6e-22 BH1123 [T] COG4753 Response regulator containing CheY-like recei... 100 2e-21 SPy1587 [T] COG4753 Response regulator containing CheY-like rece... 93 4e-19 SP0661 [T] COG4753 Response regulator containing CheY-like recei... 90 4e-18 >BH2109 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 525 Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 50/133 (37%), Positives = 85/133 (63%), Gaps = 1/133 (0%) Query: 6 RVLLADDEPVILRGLKKLISWDTLGLDIVGEARDGIELKAMIDTCAPDLVISDISMPGFS 65 +VLLADDE + GLK LI W+ G ++ EA +G + ++ PDLVI+DI MP F Sbjct: 3 KVLLADDEFFVRHGLKSLIEWEKCGYEVAAEADNGEDAFKLVQEIKPDLVITDIRMPVFD 62 Query: 66 GIDIIRDIHES-GRPVKVVFISAYQEFSYARQAIQYGALDYIVKPVNTGQLEQVVGRAVA 124 G+ +I+ ++E+ K + IS Y +FSYA++A+++GA+D+++KP++ +LE + + A Sbjct: 63 GLQLIQKVNETLSFNTKFIIISGYNDFSYAQKAVRFGAVDFVLKPIDQDELEAALIKLAA 122 Query: 125 MIRQESEEERNKE 137 + QE ++E Sbjct: 123 TLDQEKATNSDQE 135 >BH0793 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 508 Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 45/111 (40%), Positives = 74/111 (66%) Query: 5 IRVLLADDEPVILRGLKKLISWDTLGLDIVGEARDGIELKAMIDTCAPDLVISDISMPGF 64 IRV+L DDEP+IL GLK LI W LG +IV AR+G+E + + DL+I+DI MP Sbjct: 2 IRVMLVDDEPLILEGLKHLIDWGQLGYEIVATARNGVEALEIAKYVSFDLLITDIKMPEK 61 Query: 65 SGIDIIRDIHESGRPVKVVFISAYQEFSYARQAIQYGALDYIVKPVNTGQL 115 +G+++I ++E + ++ + +S +QEF + +Q + G +Y++KP+N +L Sbjct: 62 TGLELIAALNEREKTIRSIVLSGFQEFHFVKQGLTLGIENYLLKPINEKEL 112 >BH1123 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 526 Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 92/156 (58%) Query: 6 RVLLADDEPVILRGLKKLISWDTLGLDIVGEARDGIELKAMIDTCAPDLVISDISMPGFS 65 +V++ DDE ++RGLKK+ISW LG + VGEA +G ++ +P +V++DI MP Sbjct: 3 KVVIIDDEEHVVRGLKKIISWKALGCECVGEAANGRRGLDIVRETSPHIVLTDIYMPIMY 62 Query: 66 GIDIIRDIHESGRPVKVVFISAYQEFSYARQAIQYGALDYIVKPVNTGQLEQVVGRAVAM 125 G+D+I+ + E G +VV +S Y EF +AR+A+Q DY+ KP + +E V+ R + Sbjct: 63 GLDMIQILREDGFDGEVVILSGYSEFEHARKAMQLNITDYLSKPASVDTIETVLKRVINK 122 Query: 126 IRQESEEERNKEMLKSYERKHHSITVEELLERLTDG 161 + ++ ++ + L + +++ + E ++ L G Sbjct: 123 LEEKQRQQGYLQELTNKVKRYEPLVETEWMKSLLTG 158 >SPy1587 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 494 Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 43/111 (38%), Positives = 70/111 (63%) Query: 6 RVLLADDEPVILRGLKKLISWDTLGLDIVGEARDGIELKAMIDTCAPDLVISDISMPGFS 65 +VLL DDE +IL+GL +I W LG ++V AR G E A + D++ISD++MPG + Sbjct: 3 KVLLVDDEYMILQGLTMIIDWQALGFEVVQTARSGKEALAYLTQYPVDVMISDVTMPGMT 62 Query: 66 GIDIIRDIHESGRPVKVVFISAYQEFSYARQAIQYGALDYIVKPVNTGQLE 116 G+D+I ++ + +S YQEFSY ++A++ Y++KPV+ +L+ Sbjct: 63 GLDLIEAAKTYHPQLQTLILSGYQEFSYVQKAMELETKGYLLKPVDKAELQ 113 >SP0661 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 245 Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 85/133 (63%) Query: 7 VLLADDEPVILRGLKKLISWDTLGLDIVGEARDGIELKAMIDTCAPDLVISDISMPGFSG 66 +L+ +DE ++ +GL KL++ ++I+G+A +G + +I PD++++DI+MP +G Sbjct: 5 ILIVEDEYLVRQGLTKLVNVAAYDMEIIGQAENGRQAWELIQKQVPDIILTDINMPHLNG 64 Query: 67 IDIIRDIHESGRPVKVVFISAYQEFSYARQAIQYGALDYIVKPVNTGQLEQVVGRAVAMI 126 I + + E+ V +VF++ Y +F YA A++ G DY++KP + +E+++G+ + Sbjct: 65 IQLASLVRETYPQVHLVFLTGYDDFDYALSAVKLGVDDYLLKPFSRQDIEEMLGKIKQKL 124 Query: 127 RQESEEERNKEML 139 +E +EE+ +++L Sbjct: 125 DKEEKEEQLQDLL 137 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.134 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,968,016 Number of extensions: 886935 Number of successful extensions: 2554 Number of sequences better than 1.0e-05: 332 Number of HSP's gapped: 2598 Number of HSP's successfully gapped: 332 Length of query: 288 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 183 Effective length of database: 26,268,361 Effective search space: 4807110063 Effective search space used: 4807110063 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 115 (48.9 bits)