BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0504.0013.p (268 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMb20233 [G] COG0395 ABC-type sugar transport system, permease c... 150 1e-36 BH0903 [G] COG0395 ABC-type sugar transport system, permease com... 150 2e-36 lin1843 [G] COG0395 ABC-type sugar transport system, permease co... 148 8e-36 BS_araQ [G] COG0395 ABC-type sugar transport system, permease co... 147 2e-35 lin0219 [G] COG0395 ABC-type sugar transport system, permease co... 139 6e-33 >SMb20233 [G] COG0395 ABC-type sugar transport system, permease component Length = 282 Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 73/214 (34%), Positives = 124/214 (57%) Query: 54 ILSGTKLTNWIGNSXXXXXXXXXXXXXXXXXXXXXXSKIPFRYRTLMFFVVLAGLLIPGE 113 +L+G ++ NS +++ F R +MF + + L+ Sbjct: 69 VLTGVPFIRYMVNSFLVSATVTVVALFFHTMAGYALARLRFPGREVMFLSIFSTFLVSLP 128 Query: 114 ATIIPLYQVAKDMNLLNSYQGLIIPALASPVAVIVLKSFFDSIPNDLLESVQIDGGGSWR 173 I+PL+ + K M +LNSY GLIIPA+ + + +L+ ++ S+P ++ E+ +IDG G WR Sbjct: 129 VIIVPLFVIVKAMGMLNSYAGLIIPAIFNAFGIFLLRQYYLSLPKEIEEAARIDGAGYWR 188 Query: 174 IFTRIMLPLCRPALASMAILTFIGSWNNFLWPFLSITDDNLFTLPMGIPTLISQYSEDYV 233 I+ ++LPL RP ++++AIL F+ +WN+FLWP +D +L+ + +GI SQYS + Sbjct: 189 IYWSVILPLSRPIMSALAILFFLANWNSFLWPLTITSDPDLWVVQLGIANFKSQYSASWN 248 Query: 234 KPMVVNAIASIPIIVLFVIFERQIVKGISMSGIK 267 M + I +IP ++LFVIF+RQI+ + SG+K Sbjct: 249 YMMAASTIVAIPTLILFVIFQRQIMDSLKTSGLK 282 >BH0903 [G] COG0395 ABC-type sugar transport system, permease component Length = 279 Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 71/207 (34%), Positives = 123/207 (59%) Query: 62 NWIGNSXXXXXXXXXXXXXXXXXXXXXXSKIPFRYRTLMFFVVLAGLLIPGEATIIPLYQ 121 W GNS + F+ R F +VL L+IP E ++PL+Q Sbjct: 73 TWFGNSVWISIVIVVLSLLFSSMVGYALAVYDFKGRNFFFLLVLIILMIPFEILMLPLFQ 132 Query: 122 VAKDMNLLNSYQGLIIPALASPVAVIVLKSFFDSIPNDLLESVQIDGGGSWRIFTRIMLP 181 + + L+N+Y +I+PA+ +P+AV + + +P +L+++ +IDG + IF +IMLP Sbjct: 133 LMIKLQLVNTYTAVILPAIVAPIAVFFFRQYALGLPKELMDAARIDGCTEYGIFFKIMLP 192 Query: 182 LCRPALASMAILTFIGSWNNFLWPFLSITDDNLFTLPMGIPTLISQYSEDYVKPMVVNAI 241 L P+LA+MAIL + SWNNFLWP + + +++FTLP+G+ TL++ Y +Y + + + Sbjct: 193 LMGPSLAAMAILQGLNSWNNFLWPLVVLRSNDMFTLPIGLATLLTPYGNNYDILLAGSVM 252 Query: 242 ASIPIIVLFVIFERQIVKGISMSGIKG 268 +PI++LF+ F+R + G+++ G+KG Sbjct: 253 TIVPIVILFIFFQRYFIAGLTVGGVKG 279 >lin1843 [G] COG0395 ABC-type sugar transport system, permease component Length = 276 Score = 148 bits (374), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 67/178 (37%), Positives = 111/178 (62%) Query: 90 SKIPFRYRTLMFFVVLAGLLIPGEATIIPLYQVAKDMNLLNSYQGLIIPALASPVAVIVL 149 +K F+ + +F++VLA ++IPG+ T+IP+Y + L N+ G+++P L + + Sbjct: 99 AKFKFKGKNKLFYLVLATMMIPGQVTMIPVYLLLNAAGLTNTMTGIVLPGLVGAFGIFLF 158 Query: 150 KSFFDSIPNDLLESVQIDGGGSWRIFTRIMLPLCRPALASMAILTFIGSWNNFLWPFLSI 209 + F +I +DLLE+ ++DG + IF RI++P+ RP LA ILTFI WN+FLWP + Sbjct: 159 RQFMSTISDDLLEAARLDGASEFYIFWRIVIPISRPVLAVQGILTFIAGWNSFLWPLIIA 218 Query: 210 TDDNLFTLPMGIPTLISQYSEDYVKPMVVNAIASIPIIVLFVIFERQIVKGISMSGIK 267 D+ +TL +G+ L QY +Y M IPII++F+ F++ I+KG ++SG+K Sbjct: 219 NDEKFYTLSVGLQLLKGQYGSNYALQMAGATFMVIPIILIFMTFQKYILKGFNVSGMK 276 >BS_araQ [G] COG0395 ABC-type sugar transport system, permease component Length = 281 Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 85/272 (31%), Positives = 153/272 (56%), Gaps = 7/272 (2%) Query: 4 VYRL-VSLF---MAVLFAGPLVWMLFVSVK--EEGMKIITVTDWFTPPYSFAVYQEILSG 57 VYR+ ++LF +++L+ P+ +L S+K E +++ D SF Y + +G Sbjct: 10 VYRIALTLFFMMLSLLYLFPIFCLLLGSLKPSSELLRVGLNLDIDPKVMSFDNYTFLFNG 69 Query: 58 TKLT-NWIGNSXXXXXXXXXXXXXXXXXXXXXXSKIPFRYRTLMFFVVLAGLLIPGEATI 116 + W NS + F+ R ++F +VL +++P E + Sbjct: 70 GSIYFKWFFNSLVLGLFTTVLTLFFSSMIGYGLAVYDFKGRNIIFVLVLIIMMVPLEVMM 129 Query: 117 IPLYQVAKDMNLLNSYQGLIIPALASPVAVIVLKSFFDSIPNDLLESVQIDGGGSWRIFT 176 +PL+++ ++L++SY G+I+P +ASPVAV + + +P DLL+S ++DG + IF Sbjct: 130 LPLFKLTVGLHLIDSYTGVILPLIASPVAVFFFRQYALGLPRDLLDSARMDGCTEFGIFF 189 Query: 177 RIMLPLCRPALASMAILTFIGSWNNFLWPFLSITDDNLFTLPMGIPTLISQYSEDYVKPM 236 RIM PL +PA +M IL + SWNNFLWP + + +FTLP+G+ +L+S Y +Y + Sbjct: 190 RIMAPLMKPAFGAMIILQSLNSWNNFLWPLIVLRSKEMFTLPIGLSSLLSPYGNNYDMLI 249 Query: 237 VVNAIASIPIIVLFVIFERQIVKGISMSGIKG 268 + A +P+I++F+ F++ + G+++ G+KG Sbjct: 250 SGSVFAILPVIIIFLFFQKYFISGLTVGGVKG 281 >lin0219 [G] COG0395 ABC-type sugar transport system, permease component Length = 282 Score = 139 bits (349), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 72/249 (28%), Positives = 131/249 (52%) Query: 19 PLVWMLFVSVKEEGMKIITVTDWFTPPYSFAVYQEILSGTKLTNWIGNSXXXXXXXXXXX 78 P VWM+ + K ++ + + A + ++ + ++ NS Sbjct: 33 PFVWMISTAFKTGAANMVLPPQFIPKEPTTANFTQVFEMFPMLRFLMNSVVVAVVTTLGQ 92 Query: 79 XXXXXXXXXXXSKIPFRYRTLMFFVVLAGLLIPGEATIIPLYQVAKDMNLLNSYQGLIIP 138 ++IPF R +F + LA +++P + T+IP + + K L+SY GLI+P Sbjct: 93 MLFCSMAAYAFARIPFWGRDKLFLLYLATMMVPAQVTMIPQFILMKQFGWLDSYAGLIVP 152 Query: 139 ALASPVAVIVLKSFFDSIPNDLLESVQIDGGGSWRIFTRIMLPLCRPALASMAILTFIGS 198 AL S +L+ F IP +L E+ +DG + IF +++LPL +P A++ ILTF+ S Sbjct: 153 ALFSVFGTFLLRQAFMGIPKELEEAAFMDGANHFTIFRKVILPLAKPTFATLGILTFMQS 212 Query: 199 WNNFLWPFLSITDDNLFTLPMGIPTLISQYSEDYVKPMVVNAIASIPIIVLFVIFERQIV 258 WN++LWP + + + TLP+G+ L +Y +Y M I+ IPI+ +++ ++ + Sbjct: 213 WNSYLWPLIVTSSQEMATLPLGLSLLQGRYGTNYGLMMAGVLISVIPILAVYLFAQKYFI 272 Query: 259 KGISMSGIK 267 +G++MSG+K Sbjct: 273 QGMAMSGMK 281 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.327 0.143 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,582,820 Number of extensions: 592872 Number of successful extensions: 3083 Number of sequences better than 1.0e-05: 152 Number of HSP's gapped: 2938 Number of HSP's successfully gapped: 152 Length of query: 268 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 163 Effective length of database: 26,268,361 Effective search space: 4281742843 Effective search space used: 4281742843 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 115 (48.9 bits)